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Computational method for reducing variance with Affymetrix microarrays.

Welle S, Brooks AI, Thornton CA.

BMC Bioinformatics. 2002 Aug 30;3:23.PMID: 12204100 [PubMed - indexed for MEDLINE]Related articlesFree article

Sources of variability and effect of experimental approach on expression profiling data interpretation.

Bakay M, Chen YW, Borup R, Zhao P, Nagaraju K, Hoffman EP.

BMC Bioinformatics. 2002;3:4. Epub 2002 Jan 31.PMID: 11936955 [PubMed - indexed for MEDLINE]Related articlesFree article

Reproducibility of gene expression across generations of Affymetrix microarrays.

Nimgaonkar A, Sanoudou D, Butte AJ, Haslett JN, Kunkel LM, Beggs AH, Kohane IS.

BMC Bioinformatics. 2003 Jun 25;4:27. Epub 2003 Jun 25.PMID: 12823866 [PubMed - indexed for MEDLINE]Related articlesFree article

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.PMID: 15117752 [PubMed - indexed for MEDLINE]Related articlesFree article

Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.

Sásik R, Calvo E, Corbeil J.

Bioinformatics. 2002 Dec;18(12):1633-40.PMID: 12490448 [PubMed - indexed for MEDLINE]Related articlesFree article

Match-only integral distribution (MOID) algorithm for high-density oligonucleotide array analysis.

Zhou Y, Abagyan R.

BMC Bioinformatics. 2002;3:3. Epub 2002 Jan 22.PMID: 11835687 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene expression profile of aging in human muscle.

Welle S, Brooks AI, Delehanty JM, Needler N, Thornton CA.

Physiol Genomics. 2003 Jul 7;14(2):149-59.PMID: 12783983 [PubMed - indexed for MEDLINE]Related articles

Sex genes for genomic analysis in human brain: internal controls for comparison of probe level data extraction.

Galfalvy HC, Erraji-Benchekroun L, Smyrniotopoulos P, Pavlidis P, Ellis SP, Mann JJ, Sibille E, Arango V.

BMC Bioinformatics. 2003 Sep 8;4:37. Epub 2003 Sep 8.PMID: 12962547 [PubMed - indexed for MEDLINE]Related articlesFree article

Leveraging two-way probe-level block design for identifying differential gene expression with high-density oligonucleotide arrays.

Barrera L, Benner C, Tao YC, Winzeler E, Zhou Y.

BMC Bioinformatics. 2004 Apr 20;5:42.PMID: 15099405 [PubMed - indexed for MEDLINE]Related articlesFree article

Can Zipf's law be adapted to normalize microarrays?

Lu T, Costello CM, Croucher PJ, Häsler R, Deuschl G, Schreiber S.

BMC Bioinformatics. 2005 Feb 23;6:37.PMID: 15727680 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data.

Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S.

BMC Bioinformatics. 2005 Feb 10;6:26.PMID: 15705192 [PubMed - indexed for MEDLINE]Related articlesFree article

Spotted long oligonucleotide arrays for human gene expression analysis.

Barczak A, Rodriguez MW, Hanspers K, Koth LL, Tai YC, Bolstad BM, Speed TP, Erle DJ.

Genome Res. 2003 Jul;13(7):1775-85. Epub 2003 Jun 12.PMID: 12805270 [PubMed - indexed for MEDLINE]Related articlesFree article

Normalization for Affymetrix GeneChips.

Boes T, Neuhäuser M.

Methods Inf Med. 2005;44(3):414-7.PMID: 16113766 [PubMed - indexed for MEDLINE]Related articles

Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations.

Autio R, Kilpinen S, Saarela M, Kallioniemi O, Hautaniemi S, Astola J.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S24.PMID: 19208124 [PubMed - indexed for MEDLINE]Related articlesFree article

Effects of filtering by Present call on analysis of microarray experiments.

McClintick JN, Edenberg HJ.

BMC Bioinformatics. 2006 Jan 31;7:49.PMID: 16448562 [PubMed - indexed for MEDLINE]Related articlesFree article

A new method for class prediction based on signed-rank algorithms applied to Affymetrix microarray experiments.

Rème T, Hose D, De Vos J, Vassal A, Poulain PO, Pantesco V, Goldschmidt H, Klein B.

BMC Bioinformatics. 2008 Jan 11;9:16.PMID: 18190711 [PubMed - indexed for MEDLINE]Related articlesFree article

Rank Difference Analysis of Microarrays (RDAM), a novel approach to statistical analysis of microarray expression profiling data.

Martin DE, Demougin P, Hall MN, Bellis M.

BMC Bioinformatics. 2004 Oct 11;5:148.PMID: 15476558 [PubMed - indexed for MEDLINE]Related articlesFree article

Noise sampling method: an ANOVA approach allowing robust selection of differentially regulated genes measured by DNA microarrays.

Draghici S, Kulaeva O, Hoff B, Petrov A, Shams S, Tainsky MA.

Bioinformatics. 2003 Jul 22;19(11):1348-59.PMID: 12874046 [PubMed - indexed for MEDLINE]Related articlesFree article

Mass distributed clustering: a new algorithm for repeated measurements in gene expression data.

Matsumoto S, Aisaki K, Kanno J.

Genome Inform. 2005;16(2):183-94.PMID: 16901101 [PubMed - indexed for MEDLINE]Related articles

Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.

Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.

J Neurosci Methods. 2006 Apr 15;152(1-2):179-89. Epub 2005 Oct 25.PMID: 16253343 [PubMed - indexed for MEDLINE]Related articles