PubMed

Microarray results: how accurate are they?

Kothapalli R, Yoder SJ, Mane S, Loughran TP Jr.

BMC Bioinformatics. 2002 Aug 23;3:22.PMID: 12194703 [PubMed - indexed for MEDLINE]Related articlesFree article

Accuracy of cDNA microarray methods to detect small gene expression changes induced by neuregulin on breast epithelial cells.

Yao B, Rakhade SN, Li Q, Ahmed S, Krauss R, Draghici S, Loeb JA.

BMC Bioinformatics. 2004 Jul 23;5:99.PMID: 15272935 [PubMed - indexed for MEDLINE]Related articlesFree article

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.

Carter SL, Eklund AC, Mecham BH, Kohane IS, Szallasi Z.

BMC Bioinformatics. 2005 Apr 25;6:107.PMID: 15850491 [PubMed - indexed for MEDLINE]Related articlesFree article

Increased measurement accuracy for sequence-verified microarray probes.

Mecham BH, Wetmore DZ, Szallasi Z, Sadovsky Y, Kohane I, Mariani TJ.

Physiol Genomics. 2004 Aug 11;18(3):308-15.PMID: 15161964 [PubMed - indexed for MEDLINE]Related articles

Reliability and reproducibility issues in DNA microarray measurements.

Draghici S, Khatri P, Eklund AC, Szallasi Z.

Trends Genet. 2006 Feb;22(2):101-9. Epub 2005 Dec 27. Review.PMID: 16380191 [PubMed - indexed for MEDLINE]Related articlesFree article

Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements.

Mecham BH, Klus GT, Strovel J, Augustus M, Byrne D, Bozso P, Wetmore DZ, Mariani TJ, Kohane IS, Szallasi Z.

Nucleic Acids Res. 2004 May 25;32(9):e74.PMID: 15161944 [PubMed - indexed for MEDLINE]Related articlesFree article

Cross-platform comparison of SYBR Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC) study.

Arikawa E, Sun Y, Wang J, Zhou Q, Ning B, Dial SL, Guo L, Yang J.

BMC Genomics. 2008 Jul 11;9:328.PMID: 18620571 [PubMed - indexed for MEDLINE]Related articlesFree article

An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression.

Yue H, Eastman PS, Wang BB, Minor J, Doctolero MH, Nuttall RL, Stack R, Becker JW, Montgomery JR, Vainer M, Johnston R.

Nucleic Acids Res. 2001 Apr 15;29(8):E41-1.PMID: 11292855 [PubMed - indexed for MEDLINE]Related articlesFree article

Inter-platform comparability of microarrays in acute lymphoblastic leukemia.

Mitchell SA, Brown KM, Henry MM, Mintz M, Catchpoole D, LaFleur B, Stephan DA.

BMC Genomics. 2004 Sep 23;5(1):71.PMID: 15387886 [PubMed - indexed for MEDLINE]Related articlesFree article

Differentially profiling the low-expression transcriptomes of human hepatoma using a novel SSH/microarray approach.

Pan YS, Lee YS, Lee YL, Lee WC, Hsieh SY.

BMC Genomics. 2006 May 31;7:131.PMID: 16737534 [PubMed - indexed for MEDLINE]Related articlesFree article

Preliminary study on the gene expression profiles of bone marrow mononuclear cells from patients with myelo-dysplastic syndrome by using cDNA microarray.

Qian J, Chen ZX, Cen JN, Wang W.

Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2004 Oct;12(5):595-600.PMID: 15498117 [PubMed - indexed for MEDLINE]Related articles

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

BMC Genomics. 2006 Mar 21;7:59.PMID: 16551369 [PubMed - indexed for MEDLINE]Related articlesFree article

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

Culhane AC, Perrière G, Higgins DG.

BMC Bioinformatics. 2003 Nov 21;4:59.PMID: 14633289 [PubMed - indexed for MEDLINE]Related articlesFree article

Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton.

Muller J, Mehlen A, Vetter G, Yatskou M, Muller A, Chalmel F, Poch O, Friederich E, Vallar L.

BMC Genomics. 2007 Aug 29;8:294.PMID: 17727702 [PubMed - indexed for MEDLINE]Related articlesFree article

Effect of various normalization methods on Applied Biosystems expression array system data.

Barbacioru CC, Wang Y, Canales RD, Sun YA, Keys DN, Chan F, Poulter KA, Samaha RR.

BMC Bioinformatics. 2006 Dec 15;7:533.PMID: 17173684 [PubMed - indexed for MEDLINE]Related articlesFree article

Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations.

Shippy R, Sendera TJ, Lockner R, Palaniappan C, Kaysser-Kranich T, Watts G, Alsobrook J.

BMC Genomics. 2004 Sep 2;5(1):61.PMID: 15345031 [PubMed - indexed for MEDLINE]Related articlesFree article

Within the fold: assessing differential expression measures and reproducibility in microarray assays.

Yang IV, Chen E, Hasseman JP, Liang W, Frank BC, Wang S, Sharov V, Saeed AI, White J, Li J, Lee NH, Yeatman TJ, Quackenbush J.

Genome Biol. 2002 Oct 24;3(11):research0062. Epub 2002 Oct 24.PMID: 12429061 [PubMed - indexed for MEDLINE]Related articlesFree article

Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes.

Warnat P, Eils R, Brors B.

BMC Bioinformatics. 2005 Nov 4;6:265.PMID: 16271137 [PubMed - indexed for MEDLINE]Related articlesFree article

Profiling of differential expression of messenger RNA in normal, benign, and metastatic prostate cell lines.

Chakrabarti R, Robles LD, Gibson J, Muroski M.

Cancer Genet Cytogenet. 2002 Dec;139(2):115-25.PMID: 12550771 [PubMed - indexed for MEDLINE]Related articles

Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.

Chen JJ, Hsueh HM, Delongchamp RR, Lin CJ, Tsai CA.

BMC Bioinformatics. 2007 Oct 25;8:412.PMID: 17961233 [PubMed - indexed for MEDLINE]Related articlesFree article