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    Results: 1 to 20 of 189

    1.

    Preferred codons and amino acid couples in hyperthermophiles.

    De Farias ST, Bonato MC.

    Genome Biol. 2002 Jul 19;3(8):PREPRINT0006. Epub 2002 Jul 19.

    PMID:
    12186639
    [PubMed - indexed for MEDLINE]
    2.

    Preferred amino acids and thermostability.

    Farias ST, Bonato MC.

    Genet Mol Res. 2003 Dec 30;2(4):383-93.

    PMID:
    15011142
    [PubMed - indexed for MEDLINE]
    Free Article
    3.

    Analysis of Nanoarchaeum equitans genome and proteome composition: indications for hyperthermophilic and parasitic adaptation.

    Das S, Paul S, Bag SK, Dutta C.

    BMC Genomics. 2006 Jul 25;7:186.

    PMID:
    16869956
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content.

    Singer GA, Hickey DA.

    Gene. 2003 Oct 23;317(1-2):39-47.

    PMID:
    14604790
    [PubMed - indexed for MEDLINE]
    5.

    Comparative analysis of protein domain organization.

    Ye Y, Godzik A.

    Genome Res. 2004 Mar;14(3):343-53.

    PMID:
    14993202
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Simple sequence proteins in prokaryotic proteomes.

    Subramanyam MB, Gnanamani M, Ramachandran S.

    BMC Genomics. 2006 Jun 8;7:141.

    PMID:
    16762057
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Thermo-search: lifestyle and thermostability analysis.

    Farias ST, van der Linden MG, Rêgo TG, Araújo DA, Bonato MC.

    In Silico Biol. 2004;4(3):377-80.

    PMID:
    15724287
    [PubMed - indexed for MEDLINE]
    Free Article
    8.

    Species-specific protein sequence and fold optimizations.

    Dumontier M, Michalickova K, Hogue CW.

    BMC Bioinformatics. 2002 Dec 17;3:39. Epub 2002 Dec 17.

    PMID:
    12487631
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Robust determinants of thermostability highlighted by a codon frequency index capable of discriminating thermophilic from mesophilic genomes.

    Montanucci L, Martelli PL, Fariselli P, Casadio R.

    J Proteome Res. 2007 Jul;6(7):2502-8. Epub 2007 May 26.

    PMID:
    17530792
    [PubMed - indexed for MEDLINE]
    10.

    Correlation between codon usage and thermostability.

    Van der Linden MG, de Farias ST.

    Extremophiles. 2006 Oct;10(5):479-81. Epub 2006 Jul 8.

    PMID:
    16830074
    [PubMed - indexed for MEDLINE]
    11.

    Environment specific substitution tables for thermophilic proteins.

    Mizuguchi K, Sele M, Cubellis MV.

    BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S15.

    PMID:
    17430559
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii.

    Saunders NF, Thomas T, Curmi PM, Mattick JS, Kuczek E, Slade R, Davis J, Franzmann PD, Boone D, Rusterholtz K, Feldman R, Gates C, Bench S, Sowers K, Kadner K, Aerts A, Dehal P, Detter C, Glavina T, Lucas S, Richardson P, Larimer F, Hauser L, Land M, Cavicchioli R.

    Genome Res. 2003 Jul;13(7):1580-8. Epub 2003 Jun 12.

    PMID:
    12805271
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Amino acid coupling patterns in thermophilic proteins.

    Liang HK, Huang CM, Ko MT, Hwang JK.

    Proteins. 2005 Apr 1;59(1):58-63.

    PMID:
    15688447
    [PubMed - indexed for MEDLINE]
    14.

    Thermophiles like hot T.

    Lieph R, Veloso FA, Holmes DS.

    Trends Microbiol. 2006 Oct;14(10):423-6. Epub 2006 Aug 28.

    PMID:
    16934982
    [PubMed - indexed for MEDLINE]
    15.

    The stability of thermophilic proteins: a study based on comprehensive genome comparison.

    Das R, Gerstein M.

    Funct Integr Genomics. 2000 May;1(1):76-88.

    PMID:
    11793224
    [PubMed - indexed for MEDLINE]
    16.

    Bivalent cations and amino-acid composition contribute to the thermostability of Bacillus licheniformis xylose isomerase.

    Vieille C, Epting KL, Kelly RM, Zeikus JG.

    Eur J Biochem. 2001 Dec;268(23):6291-301.

    PMID:
    11733026
    [PubMed - indexed for MEDLINE]
    Free Article
    17.

    Protein and DNA sequence determinants of thermophilic adaptation.

    Zeldovich KB, Berezovsky IN, Shakhnovich EI.

    PLoS Comput Biol. 2007 Jan 12;3(1):e5. Epub 2006 Nov 30.

    PMID:
    17222055
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis.

    Tekaia F, Yeramian E, Dujon B.

    Gene. 2002 Sep 4;297(1-2):51-60.

    PMID:
    12384285
    [PubMed - indexed for MEDLINE]
    19.

    Analysis of tRNA composition and folding in psychrophilic, mesophilic and thermophilic genomes: indications for thermal adaptation.

    Dutta A, Chaudhuri K.

    FEMS Microbiol Lett. 2010 Apr;305(2):100-8. Epub 2010 Feb 5.

    PMID:
    20659165
    [PubMed - indexed for MEDLINE]
    20.

    Analysis of the compositional biases in Plasmodium falciparum genome and proteome using Arabidopsis thaliana as a reference.

    Bastien O, Lespinats S, Roy S, Métayer K, Fertil B, Codani JJ, Maréchal E.

    Gene. 2004 Jul 21;336(2):163-73.

    PMID:
    15246528
    [PubMed - indexed for MEDLINE]

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