PubMed

Identifying functional relationships among human genes by systematic analysis of biological literature.

Tao YC, Leibel RL.

BMC Bioinformatics. 2002 Jun 7;3:16.PMID: 12067419 [PubMed - indexed for MEDLINE]Related articlesFree article

CGMIM: automated text-mining of Online Mendelian Inheritance in Man (OMIM) to identify genetically-associated cancers and candidate genes.

Bajdik CD, Kuo B, Rusaw S, Jones S, Brooks-Wilson A.

BMC Bioinformatics. 2005 Mar 29;6:78.PMID: 15796777 [PubMed - indexed for MEDLINE]Related articlesFree article

Integrative mining of traditional Chinese medicine literature and MEDLINE for functional gene networks.

Zhou X, Liu B, Wu Z, Feng Y.

Artif Intell Med. 2007 Oct;41(2):87-104. Epub 2007 Sep 5.PMID: 17804209 [PubMed - indexed for MEDLINE]Related articles

The computational analysis of scientific literature to define and recognize gene expression clusters.

Raychaudhuri S, Chang JT, Imam F, Altman RB.

Nucleic Acids Res. 2003 Aug 1;31(15):4553-60.PMID: 12888516 [PubMed - indexed for MEDLINE]Related articlesFree article

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.PMID: 15661078 [PubMed - indexed for MEDLINE]Related articlesFree article

Using text analysis to identify functionally coherent gene groups.

Raychaudhuri S, Schütze H, Altman RB.

Genome Res. 2002 Oct;12(10):1582-90.PMID: 12368251 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of biological relationships from text documents using efficient computational methods.

Palakal M, Stephens M, Mukhopadhyay S, Raje R, Rhodes S.

J Bioinform Comput Biol. 2003 Jul;1(2):307-42.PMID: 15290775 [PubMed - indexed for MEDLINE]Related articles

Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks.

Oh SJ, Joung JG, Chang JH, Zhang BT.

BMC Bioinformatics. 2006 Jun 6;7:284.PMID: 16753070 [PubMed - indexed for MEDLINE]Related articlesFree article

Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.

Milanesi L, Petrillo M, Sepe L, Boccia A, D'Agostino N, Passamano M, Di Nardo S, Tasco G, Casadio R, Paolella G.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S20.PMID: 16351747 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

BMC Bioinformatics. 2007 Jul 10;8:243.PMID: 17620146 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data.

Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S.

BMC Bioinformatics. 2005 Feb 10;6:26.PMID: 15705192 [PubMed - indexed for MEDLINE]Related articlesFree article

Mining gene-disease relationships from biomedical literature: weighting protein-protein interactions and connectivity measures.

Gonzalez G, Uribe JC, Tari L, Brophy C, Baral C.

Pac Symp Biocomput. 2007:28-39.PMID: 17992743 [PubMed - indexed for MEDLINE]Related articlesFree article

CLOE: identification of putative functional relationships among genes by comparison of expression profiles between two species.

Pellegrino M, Provero P, Silengo L, Di Cunto F.

BMC Bioinformatics. 2004 Nov 19;5:179.PMID: 15550177 [PubMed - indexed for MEDLINE]Related articlesFree article

Spectral embedding finds meaningful (relevant) structure in image and microarray data.

Higgs BW, Weller J, Solka JL.

BMC Bioinformatics. 2006 Feb 16;7:74.PMID: 16483359 [PubMed - indexed for MEDLINE]Related articlesFree article

Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes.

Franke L, van Bakel H, Fokkens L, de Jong ED, Egmont-Petersen M, Wijmenga C.

Am J Hum Genet. 2006 Jun;78(6):1011-25. Epub 2006 Apr 25.PMID: 16685651 [PubMed - indexed for MEDLINE]Related articlesFree article

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225.PMID: 18447957 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene clustering by latent semantic indexing of MEDLINE abstracts.

Homayouni R, Heinrich K, Wei L, Berry MW.

Bioinformatics. 2005 Jan 1;21(1):104-15. Epub 2004 Aug 12.PMID: 15308538 [PubMed - indexed for MEDLINE]Related articlesFree article

Exploring the boundaries: gene and protein identification in biomedical text.

Finkel J, Dingare S, Manning CD, Nissim M, Alex B, Grover C.

BMC Bioinformatics. 2005;6 Suppl 1:S5. Epub 2005 May 24.PMID: 15960839 [PubMed - indexed for MEDLINE]Related articlesFree article

Genestrace: phenomic knowledge discovery via structured terminology.

Cantor MN, Sarkar IN, Bodenreider O, Lussier YA.

Pac Symp Biocomput. 2005:103-14.PMID: 15759618 [PubMed - indexed for MEDLINE]Related articlesFree article

Utilizing logical relationships in genomic data to decipher cellular processes.

Bowers PM, O'Connor BD, Cokus SJ, Sprinzak E, Yeates TO, Eisenberg D.

FEBS J. 2005 Oct;272(20):5110-8. Review.PMID: 16218945 [PubMed - indexed for MEDLINE]Related articlesFree article