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    Results: 1 to 20 of 438

    1.

    The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.

    Cannone JJ, Subramanian S, Schnare MN, Collett JR, D'Souza LM, Du Y, Feng B, Lin N, Madabusi LV, Müller KM, Pande N, Shang Z, Yu N, Gutell RR.

    BMC Bioinformatics. 2002;3:2. Epub 2002 Jan 17. Erratum in: BMC Bioinformatics. 2002 Jul;3(1):15. PMID: 11869452 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Sequence and structural conservation in RNA ribose zippers.

    Tamura M, Holbrook SR.

    J Mol Biol. 2002 Jul 12;320(3):455-74.PMID: 12096903 [PubMed - indexed for MEDLINE]Related articles

    3.

    Molecular organization of the ribosomal RNA transcription unit and the phylogenetic study of Zymomonas mobilis ZM4.

    Lee JS, Jin SJ, Kang HS.

    Mol Cells. 2001 Feb 28;11(1):68-74.PMID: 11266123 [PubMed - indexed for MEDLINE]Related articles

    4.

    Correlation of RNA secondary structure statistics with thermodynamic stability and applications to folding.

    Wu JC, Gardner DP, Ozer S, Gutell RR, Ren P.

    J Mol Biol. 2009 Aug 28;391(4):769-83. Epub 2009 Jun 18.PMID: 19540243 [PubMed - indexed for MEDLINE]Related articles

    5.

    Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction.

    Doshi KJ, Cannone JJ, Cobaugh CW, Gutell RR.

    BMC Bioinformatics. 2004 Aug 5;5:105.PMID: 15296519 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    The European database on small subunit ribosomal RNA.

    Wuyts J, Van de Peer Y, Winkelmans T, De Wachter R.

    Nucleic Acids Res. 2002 Jan 1;30(1):183-5.PMID: 11752288 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    5S Ribosomal RNA Database.

    Szymanski M, Barciszewska MZ, Erdmann VA, Barciszewski J.

    Nucleic Acids Res. 2002 Jan 1;30(1):176-8.PMID: 11752286 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Nucleotide sequence of the 235 rRNA from Haloferax mediterranei and phylogenetic analysis of halophilic archaea based on LSU rRNA.

    Briones C, Amils R.

    Syst Appl Microbiol. 2000 Apr;23(1):124-31.PMID: 10879986 [PubMed - indexed for MEDLINE]Related articles

    9.

    Predicting U-turns in ribosomal RNA with comparative sequence analysis.

    Gutell RR, Cannone JJ, Konings D, Gautheret D.

    J Mol Biol. 2000 Jul 21;300(4):791-803.PMID: 10891269 [PubMed - indexed for MEDLINE]Related articles

    10.

    The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.

    Yarza P, Richter M, Peplies J, Euzeby J, Amann R, Schleifer KH, Ludwig W, Glöckner FO, Rosselló-Móra R.

    Syst Appl Microbiol. 2008 Sep;31(4):241-50. Epub 2008 Aug 9.PMID: 18692976 [PubMed - indexed for MEDLINE]Related articles

    11.

    Distribution of rRNA introns in the three-dimensional structure of the ribosome.

    Jackson S, Cannone J, Lee J, Gutell R, Woodson S.

    J Mol Biol. 2002 Oct 11;323(1):35-52.PMID: 12368097 [PubMed - indexed for MEDLINE]Related articles

    12.

    Organization of ribosomal RNA genes from the footrot pathogen Dichelobacter nodosus.

    La Fontaine S, Rood JI.

    Microbiology. 1996 Apr;142 ( Pt 4):889-99.PMID: 8936315 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    RNA secondary structure prediction based on free energy and phylogenetic analysis.

    Juan V, Wilson C.

    J Mol Biol. 1999 Jun 18;289(4):935-47.PMID: 10369773 [PubMed - indexed for MEDLINE]Related articles

    14.

    RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing.

    Tang TH, Rozhdestvensky TS, d'Orval BC, Bortolin ML, Huber H, Charpentier B, Branlant C, Bachellerie JP, Brosius J, Hüttenhofer A.

    Nucleic Acids Res. 2002 Feb 15;30(4):921-30.PMID: 11842103 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Bacterial phylogeny based on 16S and 23S rRNA sequence analysis.

    Ludwig W, Schleifer KH.

    FEMS Microbiol Rev. 1994 Oct;15(2-3):155-73. Review.PMID: 7524576 [PubMed - indexed for MEDLINE]Related articles

    16.

    Secondary structure prediction for aligned RNA sequences.

    Hofacker IL, Fekete M, Stadler PF.

    J Mol Biol. 2002 Jun 21;319(5):1059-66.PMID: 12079347 [PubMed - indexed for MEDLINE]Related articles

    17.

    The European ribosomal RNA database.

    Wuyts J, Perrière G, Van De Peer Y.

    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D101-3.PMID: 14681368 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Complete sequences and organization of the rrnA operon from campylobacter jejuni TGH9011 (ATCC43431).

    Kim NW, Gutell RR, Chan VL.

    Gene. 1995 Oct 16;164(1):101-6.PMID: 7590296 [PubMed - indexed for MEDLINE]Related articles

    19.

    Database for mobile group II introns.

    Dai L, Toor N, Olson R, Keeping A, Zimmerly S.

    Nucleic Acids Res. 2003 Jan 1;31(1):424-6.PMID: 12520040 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Phylogenetically enhanced statistical tools for RNA structure prediction.

    Akmaev VR, Kelley ST, Stormo GD.

    Bioinformatics. 2000 Jun;16(6):501-12.PMID: 10980147 [PubMed - indexed for MEDLINE]Related articlesFree article

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