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    Results: 1 to 20 of 114

    1.

    The past, present and future of genome-wide re-annotation.

    Ouzounis CA, Karp PD.

    Genome Biol. 2002;3(2):COMMENT2001. Epub 2002 Jan 31. Review.

    PMID:
    11864365
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Evaluation of annotation strategies using an entire genome sequence.

    Iliopoulos I, Tsoka S, Andrade MA, Enright AJ, Carroll M, Poullet P, Promponas V, Liakopoulos T, Palaios G, Pasquier C, Hamodrakas S, Tamames J, Yagnik AT, Tramontano A, Devos D, Blaschke C, Valencia A, Brett D, Martin D, Leroy C, Rigoutsos I, Sander C, Ouzounis CA.

    Bioinformatics. 2003 Apr 12;19(6):717-26.

    PMID:
    12691983
    [PubMed - indexed for MEDLINE]
    Free Article
    3.

    Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome.

    Buza TJ, McCarthy FM, Burgess SC.

    BMC Genomics. 2007 Nov 19;8:425.

    PMID:
    18021451
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

    Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

    BMC Bioinformatics. 2007 Jul 10;8:243.

    PMID:
    17620146
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Applications of InterPro in protein annotation and genome analysis.

    Biswas M, O'Rourke JF, Camon E, Fraser G, Kanapin A, Karavidopoulou Y, Kersey P, Kriventseva E, Mittard V, Mulder N, Phan I, Servant F, Apweiler R.

    Brief Bioinform. 2002 Sep;3(3):285-95.

    PMID:
    12230037
    [PubMed - indexed for MEDLINE]
    Free Article
    6.

    The PEDANT genome database in 2005.

    Riley ML, Schmidt T, Wagner C, Mewes HW, Frishman D.

    Nucleic Acids Res. 2005 Jan 1;33(Database issue):D308-10.

    PMID:
    15608204
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Development and evaluation of an automated annotation pipeline and cDNA annotation system.

    Kasukawa T, Furuno M, Nikaido I, Bono H, Hume DA, Bult C, Hill DP, Baldarelli R, Gough J, Kanapin A, Matsuda H, Schriml LM, Hayashizaki Y, Okazaki Y, Quackenbush J.

    Genome Res. 2003 Jun;13(6B):1542-51.

    PMID:
    12819153
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

    Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

    BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.

    PMID:
    15960829
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes.

    Bocs S, Danchin A, Médigue C.

    BMC Bioinformatics. 2002;3:5. Epub 2002 Feb 5.

    PMID:
    11879526
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Towards multidimensional genome annotation.

    Reed JL, Famili I, Thiele I, Palsson BO.

    Nat Rev Genet. 2006 Feb;7(2):130-41. Review.

    PMID:
    16418748
    [PubMed - indexed for MEDLINE]
    11.

    The institute for genomic research Osa1 rice genome annotation database.

    Yuan Q, Ouyang S, Wang A, Zhu W, Maiti R, Lin H, Hamilton J, Haas B, Sultana R, Cheung F, Wortman J, Buell CR.

    Plant Physiol. 2005 May;138(1):18-26.

    PMID:
    15888674
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

    Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, Smith CD, Tupy JL, Whitfied EJ, Bayraktaroglu L, Berman BP, Bettencourt BR, Celniker SE, de Grey AD, Drysdale RA, Harris NL, Richter J, Russo S, Schroeder AJ, Shu SQ, Stapleton M, Yamada C, Ashburner M, Gelbart WM, Rubin GM, Lewis SE.

    Genome Biol. 2002;3(12):RESEARCH0083. Epub 2002 Dec 31. Review.

    PMID:
    12537572
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Evaluation of BioCreAtIvE assessment of task 2.

    Blaschke C, Leon EA, Krallinger M, Valencia A.

    BMC Bioinformatics. 2005;6 Suppl 1:S16. Epub 2005 May 24.

    PMID:
    15960828
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    An integrated computational pipeline and database to support whole-genome sequence annotation.

    Mungall CJ, Misra S, Berman BP, Carlson J, Frise E, Harris N, Marshall B, Shu S, Kaminker JS, Prochnik SE, Smith CD, Smith E, Tupy JL, Wiel C, Rubin GM, Lewis SE.

    Genome Biol. 2002;3(12):RESEARCH0081. Epub 2002 Dec 23. Review.

    PMID:
    12537570
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases.

    Green ML, Karp PD.

    BMC Bioinformatics. 2004 Jun 9;5:76.

    PMID:
    15189570
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    The bologna annotation resource: a non hierarchical method for the functional and structural annotation of protein sequences relying on a comparative large-scale genome analysis.

    Bartoli L, Montanucci L, Fronza R, Martelli PL, Fariselli P, Carota L, Donvito G, Maggi GP, Casadio R.

    J Proteome Res. 2009 Sep;8(9):4362-71.

    PMID:
    19552451
    [PubMed - indexed for MEDLINE]
    18.

    EGASP: the human ENCODE Genome Annotation Assessment Project.

    Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG.

    Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7. Review.

    PMID:
    16925836
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    ArrayIDer: automated structural re-annotation pipeline for DNA microarrays.

    van den Berg BH, Konieczka JH, McCarthy FM, Burgess SC.

    BMC Bioinformatics. 2009 Jan 23;10:30.

    PMID:
    19166590
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    EAnnot: a genome annotation tool using experimental evidence.

    Ding L, Sabo A, Berkowicz N, Meyer RR, Shotland Y, Johnson MR, Pepin KH, Wilson RK, Spieth J.

    Genome Res. 2004 Dec;14(12):2503-9.

    PMID:
    15574829
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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