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    Results: 1 to 20 of 160

    1.

    Evolution of gene order conservation in prokaryotes.

    Tamames J.

    Genome Biol. 2001;2(6):RESEARCH0020. Epub 2001 Jun 1.

    PMID:
    11423009
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.

    Wolf YI, Rogozin IB, Kondrashov AS, Koonin EV.

    Genome Res. 2001 Mar;11(3):356-72.

    PMID:
    11230160
    [PubMed - indexed for MEDLINE]
    Free Article
    3.

    Genome trees constructed using five different approaches suggest new major bacterial clades.

    Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

    BMC Evol Biol. 2001 Oct 20;1:8.

    PMID:
    11734060
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Inferring functional relationships from conservation of gene order.

    Moreno-Hagelsieb G.

    Methods Mol Biol. 2008;453:181-99.

    PMID:
    18712303
    [PubMed - indexed for MEDLINE]
    5.

    Ancient origin of the tryptophan operon and the dynamics of evolutionary change.

    Xie G, Keyhani NO, Bonner CA, Jensen RA.

    Microbiol Mol Biol Rev. 2003 Sep;67(3):303-42, table of contents. Review.

    PMID:
    12966138
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes.

    Rogozin IB, Makarova KS, Wolf YI, Koonin EV.

    Brief Bioinform. 2004 Jun;5(2):131-49.

    PMID:
    15260894
    [PubMed - indexed for MEDLINE]
    Free Article
    8.

    Prokaryotic genomes: the emerging paradigm of genome-based microbiology.

    Koonin EV, Galperin MY.

    Curr Opin Genet Dev. 1997 Dec;7(6):757-63. Review.

    PMID:
    9468784
    [PubMed - indexed for MEDLINE]
    9.

    Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications.

    Siegel N, Hoegg S, Salzburger W, Braasch I, Meyer A.

    BMC Genomics. 2007 Sep 6;8:312.

    PMID:
    17822543
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes.

    Lemoine F, Labedan B, Lespinet O.

    BMC Bioinformatics. 2008 Dec 16;9:536.

    PMID:
    19087285
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales.

    Guerrero G, Peralta H, Aguilar A, Díaz R, Villalobos MA, Medrano-Soto A, Mora J.

    BMC Evol Biol. 2005 Oct 17;5:55.

    PMID:
    16229745
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.
    13.

    Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Positional conservation of clusters of overlapping promoter-like sequences in enterobacterial genomes.

    Huerta AM, Collado-Vides J, Francino MP; SMBE Tri-National Young Investigators.

    Mol Biol Evol. 2006 May;23(5):997-1010. Epub 2006 Mar 17.

    PMID:
    16547149
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Gene context conservation of a higher order than operons.

    Lathe WC 3rd, Snel B, Bork P.

    Trends Biochem Sci. 2000 Oct;25(10):474-9. Review.

    PMID:
    11050428
    [PubMed - indexed for MEDLINE]
    15.

    Organisation of the S10, spc and alpha ribosomal protein gene clusters in prokaryotic genomes.

    Coenye T, Vandamme P.

    FEMS Microbiol Lett. 2005 Jan 1;242(1):117-26.

    PMID:
    15621428
    [PubMed - indexed for MEDLINE]
    16.
    18.

    Genomic and phylogenetic perspectives on the evolution of prokaryotes.

    Brown JR.

    Syst Biol. 2001 Aug;50(4):497-512. Review.

    PMID:
    12116649
    [PubMed - indexed for MEDLINE]
    19.

    PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

    Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

    BMC Bioinformatics. 2008 Mar 26;9:170.

    PMID:
    18366802
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

    Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

    Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

    PMID:
    14759257
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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