PubMed

Genome-wide analysis of protein-DNA interactions in living cells.

Pugh BF, Gilmour DS.

Genome Biol. 2001;2(4):REVIEWS1013. Epub 2001 Apr 4. Review.PMID: 11305945 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide location and function of DNA binding proteins.

Ren B, Robert F, Wyrick JJ, Aparicio O, Jennings EG, Simon I, Zeitlinger J, Schreiber J, Hannett N, Kanin E, Volkert TL, Wilson CJ, Bell SP, Young RA.

Science. 2000 Dec 22;290(5500):2306-9.PMID: 11125145 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide location analysis reveals a role for Sub1 in RNA polymerase III transcription.

Tavenet A, Suleau A, Dubreuil G, Ferrari R, Ducrot C, Michaut M, Aude JC, Dieci G, Lefebvre O, Conesa C, Acker J.

Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14265-70. Epub 2009 Aug 11.PMID: 19706510 [PubMed - indexed for MEDLINE]Related articlesFree article

High-resolution DNA-binding specificity analysis of yeast transcription factors.

Zhu C, Byers KJ, McCord RP, Shi Z, Berger MF, Newburger DE, Saulrieta K, Smith Z, Shah MV, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A, Murthy T, Labaer J, Bulyk ML.

Genome Res. 2009 Apr;19(4):556-66. Epub 2009 Jan 21.PMID: 19158363 [PubMed - indexed for MEDLINE]Related articlesFree article

Protein binding microarrays (PBMs) for rapid, high-throughput characterization of the sequence specificities of DNA binding proteins.

Berger MF, Bulyk ML.

Methods Mol Biol. 2006;338:245-60.PMID: 16888363 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and sporulation in yeast.

Schlecht U, Erb I, Demougin P, Robine N, Borde V, Nimwegen E, Nicolas A, Primig M.

Mol Biol Cell. 2008 May;19(5):2193-207. Epub 2008 Feb 27.PMID: 18305101 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae.

Yarragudi A, Parfrey LW, Morse RH.

Nucleic Acids Res. 2007;35(1):193-202. Epub 2006 Dec 7.PMID: 17158163 [PubMed - indexed for MEDLINE]Related articlesFree article

A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription.

Steinfeld I, Shamir R, Kupiec M.

Nat Genet. 2007 Mar;39(3):303-9.PMID: 17325681 [PubMed - indexed for MEDLINE]Related articles

Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements.

Eriksson PR, Mendiratta G, McLaughlin NB, Wolfsberg TG, Mariño-Ramírez L, Pompa TA, Jainerin M, Landsman D, Shen CH, Clark DJ.

Mol Cell Biol. 2005 Oct;25(20):9127-37.PMID: 16199888 [PubMed - indexed for MEDLINE]Related articlesFree article

ABF1-binding sites promote efficient global genome nucleotide excision repair.

Yu S, Smirnova JB, Friedberg EC, Stillman B, Akiyama M, Owen-Hughes T, Waters R, Reed SH.

J Biol Chem. 2009 Jan 9;284(2):966-73. Epub 2008 Nov 6.PMID: 18996839 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.PMID: 12399584 [PubMed - indexed for MEDLINE]Related articlesFree article

Cis-acting sites contributing to expression of divergently transcribed DAL1 and DAL4 genes in S. cerevisiae: a word of caution when correlating cis-acting sequences with genome-wide expression analyses.

van der Merwe GK, van Vuuren HJ, Cooper TG.

Curr Genet. 2001 May;39(3):156-65.PMID: 11409177 [PubMed - indexed for MEDLINE]Related articles

Mapping of DNA-binding proteins along the yeast genome by UV-induced DNA-protein crosslinking.

Papatsenko DA, Priporova IV, Belikov SV, Karpov VL.

FEBS Lett. 1996 Feb 26;381(1-2):103-5.PMID: 8641413 [PubMed - indexed for MEDLINE]Related articles

Identification of high affinity Tbf1p-binding sites within the budding yeast genome.

Koering CE, Fourel G, Binet-Brasselet E, Laroche T, Klein F, Gilson E.

Nucleic Acids Res. 2000 Jul 1;28(13):2519-26.PMID: 10871401 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes.

Moqtaderi Z, Struhl K.

Mol Cell Biol. 2004 May;24(10):4118-27.PMID: 15121834 [PubMed - indexed for MEDLINE]Related articlesFree article

Dynamic reprogramming of transcription factors to and from the subtelomere.

Mak HC, Pillus L, Ideker T.

Genome Res. 2009 Jun;19(6):1014-25. Epub 2009 Apr 16.PMID: 19372386 [PubMed - indexed for MEDLINE]Related articlesFree article

Artificial recruitment of mediator by the DNA-binding domain of Adr1 overcomes glucose repression of ADH2 expression.

Young ET, Tachibana C, Chang HW, Dombek KM, Arms EM, Biddick R.

Mol Cell Biol. 2008 Apr;28(8):2509-16. Epub 2008 Feb 4.PMID: 18250152 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational approaches to identifying transcription factor binding sites in yeast genome.

Li H.

Methods Enzymol. 2002;350:484-95. No abstract available. PMID: 12073331 [PubMed - indexed for MEDLINE]Related articles

A yeast one-hybrid system to detect methylation-dependent DNA-protein interactions.

Feng SY, Ota K, Yamada Y, Sawabu N, Ito T.

Biochem Biophys Res Commun. 2004 Jan 23;313(4):922-5.PMID: 14706630 [PubMed - indexed for MEDLINE]Related articles

Combinatorial repression of the hypoxic genes of Saccharomyces cerevisiae by DNA binding proteins Rox1 and Mot3.

Klinkenberg LG, Mennella TA, Luetkenhaus K, Zitomer RS.

Eukaryot Cell. 2005 Apr;4(4):649-60.PMID: 15821125 [PubMed - indexed for MEDLINE]Related articlesFree article