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    Results: 1 to 20 of 97

    1.

    Metabolic control analysis: biological applications and insights.

    Wildermuth MC.

    Genome Biol. 2000;1(6):REVIEWS1031. Epub 2000 Dec 8. Review.

    PMID:
    11178271
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Network-based regulatory pathways analysis.

    Xiong M, Zhao J, Xiong H.

    Bioinformatics. 2004 Sep 1;20(13):2056-66. Epub 2004 Apr 8.

    PMID:
    15072999
    [PubMed - indexed for MEDLINE]
    Free Article
    3.

    Metabolic control analysis under uncertainty: framework development and case studies.

    Wang L, Birol I, Hatzimanikatis V.

    Biophys J. 2004 Dec;87(6):3750-63. Epub 2004 Oct 1.

    PMID:
    15465856
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Metabolic engineering under uncertainty. I: framework development.

    Wang L, Hatzimanikatis V.

    Metab Eng. 2006 Mar;8(2):133-41. Epub 2006 Jan 18.

    PMID:
    16414298
    [PubMed - indexed for MEDLINE]
    5.

    Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell.

    Tyson JJ, Chen KC, Novak B.

    Curr Opin Cell Biol. 2003 Apr;15(2):221-31. Review.

    PMID:
    12648679
    [PubMed - indexed for MEDLINE]
    6.

    Deriving phylogenetic trees from the similarity analysis of metabolic pathways.

    Heymans M, Singh AK.

    Bioinformatics. 2003;19 Suppl 1:i138-46.

    PMID:
    12855450
    [PubMed - indexed for MEDLINE]
    Free Article
    7.

    Systems analyses characterize integrated functions of biochemical networks.

    Gianchandani EP, Brautigan DL, Papin JA.

    Trends Biochem Sci. 2006 May;31(5):284-91. Epub 2006 Apr 17. Review.

    PMID:
    16616498
    [PubMed - indexed for MEDLINE]
    8.

    Reduction of mathematical models of signal transduction networks: simulation-based approach applied to EGF receptor signalling.

    Conzelmann H, Saez-Rodriguez J, Sauter T, Bullinger E, Allgöwer F, Gilles ED.

    Syst Biol (Stevenage). 2004 Jun;1(1):159-69.

    PMID:
    17052126
    [PubMed - indexed for MEDLINE]
    9.

    Topological analysis of mass-balanced signaling networks: a framework to obtain network properties including crosstalk.

    Papin JA, Palsson BO.

    J Theor Biol. 2004 Mar 21;227(2):283-97.

    PMID:
    14990392
    [PubMed - indexed for MEDLINE]
    10.

    Web-based information retrieval system for the prediction of metabolic pathways.

    Chen M, Hofestädt R.

    IEEE Trans Nanobioscience. 2004 Sep;3(3):192-9.

    PMID:
    15473071
    [PubMed - indexed for MEDLINE]
    11.

    Two approaches for metabolic pathway analysis?

    Klamt S, Stelling J.

    Trends Biotechnol. 2003 Feb;21(2):64-9. Review.

    PMID:
    12573854
    [PubMed - indexed for MEDLINE]
    12.

    Dynamic analysis of integrated signaling, metabolic, and regulatory networks.

    Lee JM, Gianchandani EP, Eddy JA, Papin JA.

    PLoS Comput Biol. 2008 May 23;4(5):e1000086. Erratum in: PLoS Comput Biol. 2008 Jun;4(6). doi: 10.1371/annotation/5594348b-de00-446a-bdd0-ec56e70b3553. Min Lee, Jong [corrected to Lee, Jong Min].

    PMID:
    18483615
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Protein evolution on a human signaling network.

    Cui Q, Purisima EO, Wang E.

    BMC Syst Biol. 2009 Feb 18;3:21.

    PMID:
    19226461
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    PathAligner: metabolic pathway retrieval and alignment.

    Chen M, Hofestädt R.

    Appl Bioinformatics. 2004;3(4):241-52.

    PMID:
    15702955
    [PubMed - indexed for MEDLINE]
    15.

    An introduction to metabolic networks and their structural analysis.

    Lacroix V, Cottret L, Thébault P, Sagot MF.

    IEEE/ACM Trans Comput Biol Bioinform. 2008 Oct-Dec;5(4):594-617. Review.

    PMID:
    18989046
    [PubMed - indexed for MEDLINE]
    16.

    Signalling control strength.

    Westerhoff HV.

    J Theor Biol. 2008 Jun 7;252(3):555-67. Epub 2007 Dec 5.

    PMID:
    18222488
    [PubMed - indexed for MEDLINE]
    17.

    Metabolic engineering under uncertainty--II: analysis of yeast metabolism.

    Wang L, Hatzimanikatis V.

    Metab Eng. 2006 Mar;8(2):142-59. Epub 2006 Jan 18.

    PMID:
    16413809
    [PubMed - indexed for MEDLINE]
    18.

    Signal transduction networks: topology, response and biochemical processes.

    Soyer OS, Salathé M, Bonhoeffer S.

    J Theor Biol. 2006 Jan 21;238(2):416-25. Epub 2005 Jul 20.

    PMID:
    16045939
    [PubMed - indexed for MEDLINE]
    19.

    Alignment of metabolic pathways.

    Pinter RY, Rokhlenko O, Yeger-Lotem E, Ziv-Ukelson M.

    Bioinformatics. 2005 Aug 15;21(16):3401-8. Epub 2005 Jun 28.

    PMID:
    15985496
    [PubMed - indexed for MEDLINE]
    Free Article
    20.

    Application of Petri net based analysis techniques to signal transduction pathways.

    Sackmann A, Heiner M, Koch I.

    BMC Bioinformatics. 2006 Nov 2;7:482.

    PMID:
    17081284
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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