PubMed

The alpha/beta fold uracil DNA glycosylases: a common origin with diverse fates.

Aravind L, Koonin EV.

Genome Biol. 2000;1(4):RESEARCH0007. Epub 2000 Oct 13.PMID: 11178247 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases.

Iyer LM, Koonin EV, Aravind L.

BMC Struct Biol. 2003 Jan 28;3:1. Epub 2003 Jan 28.PMID: 12553882 [PubMed - indexed for MEDLINE]Related articlesFree article

A novel type of uracil-DNA glycosylase mediating repair of hydrolytic DNA damage in the extremely thermophilic eubacterium Thermus thermophilus.

Starkuviene V, Fritz HJ.

Nucleic Acids Res. 2002 May 15;30(10):2097-102.PMID: 12000829 [PubMed - indexed for MEDLINE]Related articlesFree article

Crystal structure and mutational analysis of human uracil-DNA glycosylase: structural basis for specificity and catalysis.

Mol CD, Arvai AS, Slupphaug G, Kavli B, Alseth I, Krokan HE, Tainer JA.

Cell. 1995 Mar 24;80(6):869-78.PMID: 7697717 [PubMed - indexed for MEDLINE]Related articles

Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase.

Putnam CD, Shroyer MJ, Lundquist AJ, Mol CD, Arvai AS, Mosbaugh DW, Tainer JA.

J Mol Biol. 1999 Mar 26;287(2):331-46.PMID: 10080896 [PubMed - indexed for MEDLINE]Related articles

The structural basis of specific base-excision repair by uracil-DNA glycosylase.

Savva R, McAuley-Hecht K, Brown T, Pearl L.

Nature. 1995 Feb 9;373(6514):487-93.PMID: 7845459 [PubMed - indexed for MEDLINE]Related articles

A novel uracil-DNA glycosylase with broad substrate specificity and an unusual active site.

Sartori AA, Fitz-Gibbon S, Yang H, Miller JH, Jiricny J.

EMBO J. 2002 Jun 17;21(12):3182-91.PMID: 12065430 [PubMed - indexed for MEDLINE]Related articlesFree article

Structure and function in the uracil-DNA glycosylase superfamily.

Pearl LH.

Mutat Res. 2000 Aug 30;460(3-4):165-81. Review.PMID: 10946227 [PubMed - indexed for MEDLINE]Related articles

Complexes of the uracil-DNA glycosylase inhibitor protein, Ugi, with Mycobacterium smegmatis and Mycobacterium tuberculosis uracil-DNA glycosylases.

Acharya N, Kumar P, Varshney U.

Microbiology. 2003 Jul;149(Pt 7):1647-58.PMID: 12855717 [PubMed - indexed for MEDLINE]Related articlesFree article

Biochemical properties of single-stranded DNA-binding protein from Mycobacterium smegmatis, a fast-growing mycobacterium and its physical and functional interaction with uracil DNA glycosylases.

Acharya N, Varshney U.

J Mol Biol. 2002 May 17;318(5):1251-64.PMID: 12083515 [PubMed - indexed for MEDLINE]Related articles

Identification of a new uracil-DNA glycosylase family by expression cloning using synthetic inhibitors.

Haushalter KA, Todd Stukenberg MW, Kirschner MW, Verdine GL.

Curr Biol. 1999 Feb 25;9(4):174-85.PMID: 10074426 [PubMed - indexed for MEDLINE]Related articles

An iron-sulfur cluster in the family 4 uracil-DNA glycosylases.

Hinks JA, Evans MC, De Miguel Y, Sartori AA, Jiricny J, Pearl LH.

J Biol Chem. 2002 May 10;277(19):16936-40. Epub 2002 Feb 27.PMID: 11877410 [PubMed - indexed for MEDLINE]Related articlesFree article

Mutational analysis of the uracil DNA glycosylase inhibitor protein and its interaction with Escherichia coli uracil DNA glycosylase.

Acharya N, Roy S, Varshney U.

J Mol Biol. 2002 Aug 23;321(4):579-90.PMID: 12206774 [PubMed - indexed for MEDLINE]Related articles

Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily.

Mazumder R, Iyer LM, Vasudevan S, Aravind L.

Nucleic Acids Res. 2002 Dec 1;30(23):5229-43.PMID: 12466548 [PubMed - indexed for MEDLINE]Related articlesFree article

The DNA-repair protein AlkB, EGL-9, and leprecan define new families of 2-oxoglutarate- and iron-dependent dioxygenases.

Aravind L, Koonin EV.

Genome Biol. 2001;2(3):RESEARCH0007. Epub 2001 Feb 19.PMID: 11276424 [PubMed - indexed for MEDLINE]Related articlesFree article

DNA glycosylases in the base excision repair of DNA.

Krokan HE, Standal R, Slupphaug G.

Biochem J. 1997 Jul 1;325 ( Pt 1):1-16. Review.PMID: 9224623 [PubMed - indexed for MEDLINE]Related articlesFree article

Differential effects of single-stranded DNA binding proteins (SSBs) on uracil DNA glycosylases (UDGs) from Escherichia coli and mycobacteria.

Purnapatre K, Handa P, Venkatesh J, Varshney U.

Nucleic Acids Res. 1999 Sep 1;27(17):3487-92.PMID: 10446237 [PubMed - indexed for MEDLINE]Related articlesFree article

Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions.

Barrett TE, Savva R, Panayotou G, Barlow T, Brown T, Jiricny J, Pearl LH.

Cell. 1998 Jan 9;92(1):117-29.PMID: 9489705 [PubMed - indexed for MEDLINE]Related articles

Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects.

Parikh SS, Walcher G, Jones GD, Slupphaug G, Krokan HE, Blackburn GM, Tainer JA.

Proc Natl Acad Sci U S A. 2000 May 9;97(10):5083-8.PMID: 10805771 [PubMed - indexed for MEDLINE]Related articlesFree article

Crystal structure of Escherichia coli uracil DNA glycosylase and its complexes with uracil and glycerol: structure and glycosylase mechanism revisited.

Xiao G, Tordova M, Jagadeesh J, Drohat AC, Stivers JT, Gilliland GL.

Proteins. 1999 Apr 1;35(1):13-24.PMID: 10090282 [PubMed - indexed for MEDLINE]Related articles