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  Genome Project > A Genomic Encyclopedia of Bacteria and Archaea (GEBA) > Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 project by US DOE Joint Genome Institute (JGI-PGF)  


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    An environmental organism which has been known to cause actinomycetoma in humans.
    Project data
    Lineage: Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptosporangineae; Nocardiopsaceae; Nocardiopsis; Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111
    Photo
    The schematic of a bacterium by Todd Groesbeck, NCBI.
    The actual image of the species named above is unavailable.
      Genome Projects
     A Genomic Encyclopedia of Bacteria and Archaea (GEBA) overview:
                                  toggle on/off 1 project
     Genome sequencing:
                                  toggle on/off Sequencing status 'In progress': 2 projects
                                  toggle on/off Sequencing status 'Complete': 26 projects
                                  toggle on/off Sequencing status 'Draft assembly': 27 projects
                                  toggle on/off Sequencing status 'In progress': 1 project
     RefSeq:
                                  toggle on/off 13 projects


    Genome information:
    Name RefSeq GenBank Length (Mbp) GC content Proteins RNAs
    Master WGS NZ_ABUI00000000 ABUI00000000 6.53086 72.0% 5634 72

    Publications:
    • Tul'skaya EM et al., "A new structural type of teichoic acid and some chemotaxonomic criteria of two species Nocardiopsis dassonvillei and Nocardiopsis antarcticus.", Arch Microbiol, 1993;160(4):299-305
    • Tsujibo H et al., "Isolation of cytotoxic substance, kalafungin from an alkalophilic actinomycete, Nocardiopsis dassonvillei subsp. prasina.", Chem Pharm Bull (Tokyo), 1990 Aug;38(8):2299-300
    • Sindhuphak W et al., "Actinomycetoma caused by Nocardiopsis dassonvillei.", Arch Dermatol, 1985 Oct;121(10):1332-4
    • Mordarska H et al., "Immunogenic properties of glycolipids of Nocardiopsis dassonvillei.", Arch Immunol Ther Exp (Warsz), 1985;33(4):523-30

      Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 back to top

    A Genomic Encyclopedia of Bacteria and Archaea (GEBA)

    The GEBA project is aimed at systematically filling in the gaps in sequencing along the bacterial and archaeal branches of the tree of life. Though the wide variety of microbial sequencing projects undertaken throughout the world has created a rich, diverse collection of microbial genomes, strong biases in what has been sequenced thus far are evident. This project represents the first systematic attempt to use the tree of life itself as a guide to sequencing target selection. JGI is beginning by collaborating on a pilot project with DSMZ.

    Nocardiopsis dassonvillei. An environmental organism which has been known to cause actinomycetoma in humans.

    Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111. This strain is being sequenced for comparative genome analysis.


    Cellular features Environment Temperature
    Gram stain Shape Arrangement Endospores Motility Salinity Oxygen Req. Habitat Opt. temp. Range
              Non-halophilic   Multiple