GNC GATA type zinc finger transcription factor family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: GNC
Gene description: GATA type zinc finger transcription factor family protein
Primary source: Araport:AT5G56860
Locus tag: AT5G56860
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: carbon metabolism-involved; GATA; GATA TRANSCRIPTION FACTOR 21; GATA21; MPI10.2; MPI10_2; nitrate-inducible
Summary: Encodes a member of the GATA factor family of zinc finger transcription factors. Modulate chlorophyll biosynthesis and glutamate synthase (GLU1/Fd-GOGAT) expression.
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Genomic context

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Location:: chromosome: 5

Exon count:: 3

Sequence:: Chromosome: 5; NC_003076.8 (22989216..22991530, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The chromatin remodelling ATPase BRAHMA interacts with GATA-family transcription factor GNC to regulate flowering time in Arabidopsis.
Title: The chromatin remodelling ATPase BRAHMA interacts with GATA-family transcription factor GNC to regulate flowering time in Arabidopsis.
Results indicate key regulatory features of the GATA NITRATE-INDUCIBLE CARBON-METABOLISM-INVOLVED (GNC) and GOLDEN TWO-LIKE (GLK2) transcription factor families that contribute to the control of chloroplast biogenesis and photosynthetic activity.
Title: Coordination of Chloroplast Development through the Action of the GNC and GLK Transcription Factor Families.
a cross-repressive interaction of GNC and GNL on the one side and SOC1 on the other in the control of flowering time, greening, and cold tolerance
Title: Cross-repressive interactions between SOC1 and the GATAs GNC and GNL/CGA1 in the control of greening, cold tolerance, and flowering time in Arabidopsis.
Data indicate that CARBON-METABOLISM INVOLVED (GNC) and GNC-LIKE (GNL)/CYTOKININ-RESPONSIVE GATA FACTOR1 (CGA1) expression is repressed by AUXIN RESPONSE FACTO ARF2 and ARF7.
Title: Convergence of auxin and gibberellin signaling on the regulation of the GATA transcription factors GNC and GNL in Arabidopsis thaliana.
GNC and CGA1 regulate chlorophyll production, and positively regulate chloroplast growth in the hypocotyl. GNC overexpression promotes chloroplast biogenesis in the root.
Title: Functional characterization of the GATA transcription factors GNC and CGA1 reveals their key role in chloroplast development, growth, and division in Arabidopsis.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_125069.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables transcription cis-regulatory region binding	IDA Inferred from Direct Assay more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in chloroplast elongation	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in chloroplast organization	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within circadian rhythm	IEP Inferred from Expression Pattern more info	PubMed
involved_in cytokinin-activated signaling pathway	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within gibberellic acid mediated signaling pathway	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within glucose mediated signaling pathway	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within negative regulation of flower development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in negative regulation of gibberellic acid mediated signaling pathway	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within negative regulation of seed germination	IEP Inferred from Expression Pattern more info	PubMed
involved_in plant organ senescence	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of chlorophyll biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of DNA-templated transcription	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of carbohydrate utilization	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of chlorophyll biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of gene expression	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within regulation of nitrogen compound metabolic process	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within regulation of nitrogen compound metabolic process	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of photoperiodism, flowering	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of seed development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of seed germination	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in response to auxin	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to cytokinin	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to gibberellin	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to light stimulus	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IMP Inferred from Mutant Phenotype more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: GATA type zinc finger transcription factor family protein

NP_200497.1

GATA, nitrate-inducible, carbon metabolism-involved (GNC); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: cytokinin-responsive gata factor 1 (TAIR:AT4G26150.1); Has 1952 Blast hits to 1890 proteins in 209 species: Archae - 0; Bacteria - 2; Metazoa - 234; Fungi - 682; Plants - 707; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

22989216..22991530 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_125069.3 → NP_200497.1 GATA type zinc finger transcription factor family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_200497.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q5HZ36, Q8VZC1, Q9LV39

UniProtKB/TrEMBL

A0A5S9YEX3, A0A654GBT4, Q1EBW4

Conserved Domains (2) summary

smart00401
Location:227 → 263

ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]

COG5641
Location:180 → 259

GAT1; GATA Zn-finger-containing transcription factor [Transcription]