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    SUSD2 sushi domain containing 2 [ Bos taurus (cattle) ]

    Gene ID: 510458, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SUSD2provided by VGNC
    Official Full Name
    sushi domain containing 2provided by VGNC
    Primary source
    VGNC:VGNC:35487
    See related
    BGD:BT25233; Ensembl:ENSBTAG00000006730
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 17
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (71426379..71433950)

    Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene D-dopachrome tautomerase Neighboring gene calcineurin binding protein 1 Neighboring gene microRNA mir-2893 Neighboring gene uncharacterized LOC132342661 Neighboring gene gamma-glutamyltransferase 5 Neighboring gene gamma-glutamyltransferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sushi domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205675.2 → NP_001192604.1  sushi domain-containing protein 2 precursor

      See identical proteins and their annotated locations for NP_001192604.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000017
      UniProtKB/TrEMBL
      F1MSE7, Q0V7N1
      Related
      ENSBTAP00000029404.3, ENSBTAT00000029404.4
      Conserved Domains (6) summary
      cd00033
      Location:724 → 778
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
      pfam01033
      Location:30 → 64
      Somatomedin_B; Somatomedin B domain
      pfam03782
      Location:288 → 429
      AMOP; AMOP domain
      pfam05587
      Location:90 → 137
      Anth_Ig; Anthrax receptor extracellular domain
      pfam10342
      Location:177 → 235
      GPI-anchored; Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
      cl02516
      Location:447 → 611
      VWD; von Willebrand factor type D domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      71426379..71433950
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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