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    LOC4324504 histone H2B.5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324504, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4324504
    Gene description
    histone H2B.5
    Locus tag
    OSNPB_010153300
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    H2B.5; OsJ_000408
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2872095..2872865)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene histone H2B.6 Neighboring gene putative pentatricopeptide repeat-containing protein At5g59900 Neighboring gene aspartate--tRNA ligase, chloroplastic/mitochondrial Neighboring gene uncharacterized LOC4324506

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone H2B.5
    Names
    LOC_Os01g06010
    P0030H07.24
    putative histone H2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428131.1 → NP_001415060.1  histone H2B.5

      Status: PROVISIONAL

      Source sequence(s)
      BP184926, CI170210
      UniProtKB/Swiss-Prot
      A0A0P0UYB8, A2WKT4, Q94JE1

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      2872095..2872865
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761669.2 → XP_015617155.1  histone H2B.5

      Conserved Domains (1) summary
      smart00427
      Location:58 → 154
      H2B; Histone H2B
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94JE1.1 GenPept UniProtKB/Swiss-Prot:Q94JE1

    Gene LinkOut

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    Research Materials