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    pip4k2cb phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b [ Danio rerio (zebrafish) ]

    Gene ID: 100535634, updated on 11-Apr-2024

    Summary

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    Official Symbol
    pip4k2cbprovided by ZNC
    Official Full Name
    phosphatidylinositol-5-phosphate 4-kinase, type II, gamma bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141212-236
    See related
    Ensembl:ENSDARG00000091637 AllianceGenome:ZFIN:ZDB-GENE-141212-236
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch73-267c23.2
    Summary
    Predicted to enable ATP binding activity and phosphatidylinositol phosphate kinase activity. Predicted to act upstream of or within phosphatidylinositol metabolic process and phosphorylation. Orthologous to human PIP4K2C (phosphatidylinositol-5-phosphate 4-kinase type 2 gamma). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (2398494..2413822)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (2387789..2402970, complement)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene LIM domain and actin binding 1b Neighboring gene insulin-like growth factor binding protein 6a Neighboring gene ubiquitin-conjugating enzyme E2 variant 1 Neighboring gene casein kinase 2, alpha 4 polypeptide

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylinositol kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within phosphatidylinositol metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    phosphatidylinositol 5-phosphate 4-kinase type-2 gamma-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      2398494..2413822
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021479691.1 → XP_021335366.1  phosphatidylinositol 5-phosphate 4-kinase type-2 gamma-like isoform X2

      UniProtKB/TrEMBL
      A0A8M9QHU6
      Conserved Domains (1) summary
      cl02572
      Location:64 → 365
      PIPKc; Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II ...

    2. XM_003199408.5 → XP_003199456.1  phosphatidylinositol 5-phosphate 4-kinase type-2 gamma-like isoform X1

      UniProtKB/TrEMBL
      A0A8M1RSU5, F1QRI7
      Related
      ENSDARP00000110833.2, ENSDART00000126761.3
      Conserved Domains (1) summary
      smart00330
      Location:64 → 414
      PIPKc; Phosphatidylinositol phosphate kinases
    Nucleotide Protein Strain
    Heading Accession and Version

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