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CALM1P2 calmodulin 1 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 804, updated on 10-Oct-2023

Summary

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Official Symbol
CALM1P2provided by HGNC
Official Full Name
calmodulin 1 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:1444
See related
AllianceGenome:HGNC:1444
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See CALM1P2 in Genome Data Viewer
Location:
7p11.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (55259682..55260294, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (55420250..55420862, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (55327375..55327987, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene epidermal growth factor receptor Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:55248893-55249512 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55249513-55250132 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55253294-55254067 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55259777-55260662 Neighboring gene EGFR antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:55281927-55282427 Neighboring gene OCT4 hESC enhancer GRCh37_chr7:55304767-55305286 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:55307850-55309049 Neighboring gene solute carrier family 19 member 3 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18186 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18187 Neighboring gene EGFR long non-coding downstream RNA Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:55366838-55367536 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:55378490-55378674 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:55379236-55379736 Neighboring gene RNA exonuclease 1 homolog Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26012 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18188 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26013 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26014 Neighboring gene MPRA-validated peak6524 silencer Neighboring gene LanC like glutathione S-transferase 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:55470127-55471114 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:55495178-55495682 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:55495683-55496185 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26015 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26016

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure of the human CALM1 calmodulin gene and identification of two CALM1-related pseudogenes CALM1P1 and CALM1P2. Rhyner JA, et al. Eur J Biochem, 1994 Oct 1. PMID 7925473

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • TCAG_1643085
  • calmodulin 1 (phosphorylase kinase, delta) pseudogene 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001090.3 

    Range
    2..614
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    55259682..55260294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    55420250..55420862 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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