Bio-inspired nitrile hydration by peptidic ligands based on L-cysteine, L-methionine or L-penicillamine and pyridine-2,6-dicarboxylic acid

Molecules. 2014 Dec 12;19(12):20751-67. doi: 10.3390/molecules191220751.

Abstract

Nitrile hydratase (NHase, EC 4.2.1.84) is a metalloenzyme which catalyses the conversion of nitriles to amides. The high efficiency and broad substrate range of NHase have led to the successful application of this enzyme as a biocatalyst in the industrial syntheses of acrylamide and nicotinamide and in the bioremediation of nitrile waste. Crystal structures of both cobalt(III)- and iron(III)-dependent NHases reveal an unusual metal binding motif made up from six sequential amino acids and comprising two amide nitrogens from the peptide backbone and three cysteine-derived sulfur ligands, each at a different oxidation state (thiolate, sulfenate and sulfinate). Based on the active site geometry revealed by these crystal structures, we have designed a series of small-molecule ligands which integrate essential features of the NHase metal binding motif into a readily accessible peptide environment. We report the synthesis of ligands based on a pyridine-2,6-dicarboxylic acid scaffold and L-cysteine, L-S-methylcysteine, L-methionine or L-penicillamine. These ligands have been combined with cobalt(III) and iron(III) and tested as catalysts for biomimetic nitrile hydration. The highest levels of activity are observed with the L-penicillamine ligand which, in combination with cobalt(III), converts acetonitrile to acetamide at 1.25 turnovers and benzonitrile to benzamide at 1.20 turnovers.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetamides / chemical synthesis
  • Acetonitriles / chemistry*
  • Biocatalysis
  • Catalytic Domain
  • Cobalt / chemistry
  • Cysteine / chemistry*
  • Hydro-Lyases / chemistry
  • Iron / chemistry
  • Methionine / chemistry*
  • Models, Molecular
  • Molecular Mimicry
  • Oxidation-Reduction
  • Penicillamine / chemistry*
  • Picolinic Acids / chemistry*

Substances

  • Acetamides
  • Acetonitriles
  • Picolinic Acids
  • Cobalt
  • acetamide
  • Methionine
  • Iron
  • Hydro-Lyases
  • nitrile hydratase
  • Penicillamine
  • Cysteine
  • dipicolinic acid
  • acetonitrile