Spinal cord microglia cells were recorded, shown in part with neighbouring axons, within the lateral column during the disease course of SOD1G93A. The experiments were performed in double transgenic mice expressing EGFP in microglia and EYFP in projection neurons. For better visualization, EYFP fluorescence is depicted with a red color table in all images. All two-photon images are arranged such that rostral is to the left side. A, confocal image of a SMI32-stained cross section of spinal cord. Motor neurons were stained in the ventral part of the lumbar spinal cord. The autofluorescence of a lesion (arrow) induced by a two-photon laser pulse before perfusion of the mouse indicates the area of in vivo imaging in the lateral column of the spinal cord. B, Time course of axonal degeneration in SOD1G93A mice. Recordings were obtained in preclinical (75-day-old) and advanced clinical (120-day-old) stages in comparable regions of the lateral spinal cord. In 120-day-old mutant mice axons were mostly swollen and interrupted (some exemplary axons are marked by arrows). Note the green fluorescence of monocytes inside the vessels (vessel boundaries marked by arrowheads). C,D, Quantification of axonal and microglial signal density, respectively, in comparable regions of the lateral spinal cord during the course of disease from preclinical stage (60-day-old), onset of disease (90-day-old) to advanced clinical stage (120-day-old). E, Continuous change of microglial morphology towards a more ovoid and a less ramified shape from preclinical stages (60-day-old and 75-day-old), onset of disease (90-day-old) to clinical and advanced clinical stages (105-day-old and 120-day-old). F,G, Quantification of microglial ramification and process motility during the same stages of disease as shown in E. H, An exemplary microglia cell cluster is depicted in a clinical stage (105-day-old). Values are presented as mean ± SEM; statistical significance determined by using ANOVA followed by Tukey test (*p<0.05, **p<0.01, ***p<0.001). GM, grey matter; WM, white matter; DC, dorsal column; LC, lateral column; DR, dorsal root; VR, ventral root.