GAGs from mouse paws/ankles and knees/elbows bind GPI with different affinity. Gel mobility shift assay with 50 nm 125I-GPI in each lane is shown. A, each lane contained 50 × (0, 10,000, 1000, 100, 10, 1) nm of galactosamine-equivalent GAGs, respectively, from left to right. B, graphic analysis of binding affinity between GPI and mouse paws/ankles GAG based on the data presented in A. The binding affinity between GAG and GPI was estimated by the method developed by Lee and Lander (12) where a retardation coefficient R (R = (Mo - M)/Mo; where M is migration distance) was introduced to measure affinity for the gel mobility assay. The dissociation constant Kd was derived from the R versus R/[GalN] plot shown. Paw/ankle GAG had an average chain length of 21 saccharides, which equals 8.5 disaccharides plus a linkage tetrasaccharide. Thus, a KD of 83 nm for paw/ankle GAGs (706 nm per disaccharide divided by 8.5 disaccharides) was derived. C, each lane contained 50 × (0, 250, 25, 2.5) nm of galactosamine-equivalent GAGs. Left panel, GAGs from paws. Right panel, GAGs from knees and elbows. The experiments were repeated three times. Each time, independent GAG preparations from paw/ankle and knee/elbow joints of BALB/c mice and two additional murine strains, (B6xNOD)F1 and K/BxN, were used. The observation of the superior potency of paw/ankle GAGs to knee/elbow GAGs was replicated in every instance.