Genome Res. 2006 Nov;16(11):1329-33. Epub 2006 Oct 25.

Community annotation: procedures, protocols, and supporting tools.

Elsik CG, Worley KC, Zhang L, Milshina NV, Jiang H, Reese JT, Childs KL, Venkatraman A, Dickens CM, Weinstock GM, Gibbs RA.

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Department of Animal Science, Texas A&M University, College Station, Texas 77843, USA.

Abstract

Investigators at the Baylor College of Medicine Human Genome Sequencing Center (BCM-HGSC) and BeeBase organized a community-wide effort to manually annotate the honey bee (Apis mellifera) genome. Although various strategies for manual annotation have been used in the past, the value of dispersed community annotation has not yet been demonstrated. Here we make a case for the merit of dispersed community annotation. We present annotation procedures, standard protocols, and tools used for sequence analysis, data submission, and data management. We also report lessons learned from this dispersed community annotation effort for a metazoan genome.

PMID:: 17065605; [PubMed - indexed for MEDLINE]

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Community annotation: procedures, protocols, and supporting tools.

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