Assessing computational tools for the discove... [Nat Biotechnol. 2005] - PubMed

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Comparative analysis of regulatory motif discovery tools for transcription factor binding sites. [Genomics Proteomics Bioinforma...]
Comparative analysis of regulatory motif discovery tools for transcription factor binding sites.
Wei W, Yu XD. Genomics Proteomics Bioinformatics. 2007 May; 5(2):131-42.
Scoring functions for transcription factor binding site prediction. [BMC Bioinformatics. 2005]
Scoring functions for transcription factor binding site prediction.
Friberg M, von Rohr P, Gonnet G. BMC Bioinformatics. 2005 Apr 4; 6:84. Epub 2005 Apr 4.
An improved Gibbs sampling method for motif discovery via sequence weighting. [Comput Syst Bioinformatics Con...]
An improved Gibbs sampling method for motif discovery via sequence weighting.
Chen X, Jiang T. Comput Syst Bioinformatics Conf. 2006; :239-47.
Review An overview of the computational analyses and discovery of transcription factor binding sites. [Methods Mol Biol. 2010]
Review An overview of the computational analyses and discovery of transcription factor binding sites.
Ladunga I. Methods Mol Biol. 2010; 674:1-22.
Review A summary of computational resources for protein phosphorylation. [Curr Protein Pept Sci. 2010]
Review A summary of computational resources for protein phosphorylation.
Xue Y, Gao X, Cao J, Liu Z, Jin C, Wen L, Yao X, Ren J. Curr Protein Pept Sci. 2010 Sep; 11(6):485-96.

DNA recognition and transcriptional regulation by the WhiA sporulation factor. [Sci Rep. 2011]
DNA recognition and transcriptional regulation by the WhiA sporulation factor.
Kaiser BK, Stoddard BL. Sci Rep. 2011; 1:156. Epub 2011 Nov 14.
Distance and helical phase dependence of synergistic transcription activation in cis-regulatory module. [PLoS One. 2012]
Distance and helical phase dependence of synergistic transcription activation in cis-regulatory module.
Huang Q, Gong C, Li J, Zhuo Z, Chen Y, Wang J, Hua ZC. PLoS One. 2012; 7(1):e31198. Epub 2012 Jan 27.
ReLA, a local alignment search tool for the identification of distal and proximal gene regulatory regions and their conserved transcription factor binding sites. [Bioinformatics. 2012]
ReLA, a local alignment search tool for the identification of distal and proximal gene regulatory regions and their conserved transcription factor binding sites.
González S, Montserrat-Sentís B, Sánchez F, Puiggròs M, Blanco E, Ramirez A, Torrents D. Bioinformatics. 2012 Mar 15; 28(6):763-70. Epub 2012 Jan 16.

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Assessing computational tools for the discovery of transcription factor binding ...
Assessing computational tools for the discovery of transcription factor binding sites.
Nat Biotechnol. 2005 Jan ;23(1):137-44.

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Messenger RNA sorting in enterocytes. Co-localization with encoded proteins.
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The Vertebrate Genome Annotation (Vega) database.
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