Genome mosaicism and organismal lineages. [Trends Genet. 2004] - PubMed

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Ancient horizontal gene transfer can benefit phylogenetic reconstruction. [Trends Genet. 2006]
Ancient horizontal gene transfer can benefit phylogenetic reconstruction.
Huang J, Gogarten JP. Trends Genet. 2006 Jul; 22(7):361-6. Epub 2006 May 30.
Evolution of genes and organisms: the tree/web of life in light of horizontal gene transfer. [Ann N Y Acad Sci. 2009]
Evolution of genes and organisms: the tree/web of life in light of horizontal gene transfer.
Olendzenski L, Gogarten JP. Ann N Y Acad Sci. 2009 Oct; 1178:137-45.
Genome rearrangement distances and gene order phylogeny in gamma-Proteobacteria. [Mol Biol Evol. 2005]
Genome rearrangement distances and gene order phylogeny in gamma-Proteobacteria.
Belda E, Moya A, Silva FJ. Mol Biol Evol. 2005 Jun; 22(6):1456-67. Epub 2005 Mar 16.
Review Horizontal gene transfer and the evolution of methanogenic pathways. [Methods Mol Biol. 2009]
Review Horizontal gene transfer and the evolution of methanogenic pathways.
Fournier G. Methods Mol Biol. 2009; 532:163-79.
Review Horizontal gene transfer in cyanobacterial signature genes. [Methods Mol Biol. 2009]
Review Horizontal gene transfer in cyanobacterial signature genes.
Yerrapragada S, Siefert JL, Fox GE. Methods Mol Biol. 2009; 532:339-66.

Biased gene transfer and its implications for the concept of lineage. [Biol Direct. 2011]
Biased gene transfer and its implications for the concept of lineage.
Andam CP, Gogarten JP. Biol Direct. 2011 Sep 23; 6:47. Epub 2011 Sep 23.
A rooted net of life. [Biol Direct. 2011]
A rooted net of life.
Williams D, Fournier GP, Lapierre P, Swithers KS, Green AG, Andam CP, Gogarten JP. Biol Direct. 2011 Sep 21; 6:45. Epub 2011 Sep 21.
Towards an accurate identification of mosaic genes and partial horizontal gene transfers. [Nucleic Acids Res. 2011]
Towards an accurate identification of mosaic genes and partial horizontal gene transfers.
Boc A, Makarenkov V. Nucleic Acids Res. 2011 Nov; 39(21):e144. Epub 2011 Sep 14.

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Genome mosaicism and organismal lineages.
Genome mosaicism and organismal lineages.
Trends Genet. 2004 May ;20(5):254-60.

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