Using the TIGR assembler in shotgun sequencing projects.

Institute for Genomic Research, Rockville, MD, USA.

Supplemental Content

A case study in genome-level fragment assembly. [Bioinformatics. 2000]
A case study in genome-level fragment assembly.
Chen T, Skiena SS. Bioinformatics. 2000 Jun; 16(6):494-500.
MicroGenie: shotgun DNA sequencing. [Methods Mol Biol. 1994]
MicroGenie: shotgun DNA sequencing.
Davies P, Merrifield RK. Methods Mol Biol. 1994; 24:201-15.
A preprocessor for shotgun assembly of large genomes. [J Comput Biol. 2004]
A preprocessor for shotgun assembly of large genomes.
Roberts M, Hunt BR, Yorke JA, Bolanos RA, Delcher AL. J Comput Biol. 2004; 11(4):734-52.
Review [Introduction to genome assembler]. [Tanpakushitsu Kakusan Koso. 2005]
Review [Introduction to genome assembler].
Morishita S, Kasahara M, Sasaki S. Tanpakushitsu Kakusan Koso. 2005 Dec; 50(16 Suppl):2255-62.
Review The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets. [J Biotechnol. 2008]
Review The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets.
Droege M, Hill B. J Biotechnol. 2008 Aug 31; 136(1-2):3-10. Epub 2008 Jun 21.

Quantification and clustering of phenotypic screening data using time-series analysis for chemotherapy of schistosomiasis. [BMC Genomics. 2012]
Quantification and clustering of phenotypic screening data using time-series analysis for chemotherapy of schistosomiasis.
Lee H, Moody-Davis A, Saha U, Suzuki BM, Asarnow D, Chen S, Arkin M, Caffrey CR, Singh R. BMC Genomics. 2012; 13 Suppl 1:S4. Epub 2012 Jan 17.
A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies. [PLoS One. 2011]
A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies.
Zhang W, Chen J, Yang Y, Tang Y, Shang J, Shen B. PLoS One. 2011 Mar 14; 6(3):e17915. Epub 2011 Mar 14.
Viral communities associated with healthy and bleaching corals. [Environ Microbiol. 2008]
Viral communities associated with healthy and bleaching corals.
Marhaver KL, Edwards RA, Rohwer F. Environ Microbiol. 2008 Sep; 10(9):2277-86. Epub 2008 May 9.

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