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Normalizing biomedical terms by minimizing ambiguity and variability.
Tsuruoka Y, McNaught J, Ananiadou S.
BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S2.
PMID: 18426547 [PubMed - indexed for MEDLINE]
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Assessment of disease named entity recognition on a corpus of annotated sentences.
Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.
BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3.
PMID: 18426548 [PubMed - indexed for MEDLINE]
Utilizing weakly controlled vocabulary for sentence segmentation in biomedical literature.
Satou K, Yamamoto K.
In Silico Biol. 2005;5(1):67-79.
PMID: 15972007 [PubMed - indexed for MEDLINE]
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Learning string similarity measures for gene/protein name dictionary look-up using logistic regression.
Tsuruoka Y, McNaught J, Tsujii J, Ananiadou S.
Bioinformatics. 2007 Oct 15;23(20):2768-74. Epub 2007 Aug 12.
PMID: 17698493 [PubMed - indexed for MEDLINE]
Gene/protein name recognition based on support vector machine using dictionary as features.
Mitsumori T, Fation S, Murata M, Doi K, Doi H.
BMC Bioinformatics. 2005;6 Suppl 1:S8. Epub 2005 May 24.
PMID: 15960842 [PubMed - indexed for MEDLINE]
Building a protein name dictionary from full text: a machine learning term extraction approach.
Shi L, Campagne F.
BMC Bioinformatics. 2005 Apr 7;6:88.
PMID: 15817129 [PubMed - indexed for MEDLINE]
Automatic construction of rule-based ICD-9-CM coding systems.
Farkas R, Szarvas G.
BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S10.
PMID: 18426545 [PubMed - indexed for MEDLINE]
Gene name ambiguity of eukaryotic nomenclatures.
Chen L, Liu H, Friedman C.
Bioinformatics. 2005 Jan 15;21(2):248-56. Epub 2004 Aug 27.
PMID: 15333458 [PubMed - indexed for MEDLINE]
Exploiting and integrating rich features for biological literature classification.
Wang H, Huang M, Ding S, Zhu X.
BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S4.
PMID: 18426549 [PubMed - indexed for MEDLINE]
Exploring supervised and unsupervised methods to detect topics in biomedical text.
Lee M, Wang W, Yu H.
BMC Bioinformatics. 2006 Mar 16;7:140.
PMID: 16539745 [PubMed - indexed for MEDLINE]
Comparative analysis of five protein-protein interaction corpora.
Pyysalo S, Airola A, Heimonen J, Björne J, Ginter F, Salakoski T.
BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S6.
PMID: 18426551 [PubMed - indexed for MEDLINE]
Exploiting the performance of dictionary-based bio-entity name recognition in biomedical literature.
Yang Z, Lin H, Li Y.
Comput Biol Chem. 2008 Aug;32(4):287-91. Epub 2008 Apr 1.
PMID: 18467180 [PubMed - indexed for MEDLINE]
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Discovering gene annotations in biomedical text databases.
Cakmak A, Ozsoyoglu G.
BMC Bioinformatics. 2008 Mar 6;9:143.
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Exploiting the contextual cues for bio-entity name recognition in biomedical literature.
J Biomed Inform. 2008 Aug;41(4):580-7. Epub 2008 Jan 11.
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Detection of IUPAC and IUPAC-like chemical names.
Klinger R, Kolárik C, Fluck J, Hofmann-Apitius M, Friedrich CM.
Bioinformatics. 2008 Jul 1;24(13):i268-76.
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New challenges for text mining: mapping between text and manually curated pathways.
Oda K, Kim JD, Ohta T, Okanohara D, Matsuzaki T, Tateisi Y, Tsujii J.
BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S5.
PMID: 18426550 [PubMed - indexed for MEDLINE]
POSBIOTM-NER: a trainable biomedical named-entity recognition system.
Song Y, Kim E, Lee GG, Yi BK.
Bioinformatics. 2005 Jun 1;21(11):2794-6. Epub 2005 Apr 6.
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Quantitative assessment of dictionary-based protein named entity tagging.
Liu H, Hu ZZ, Torii M, Wu C, Friedman C.
J Am Med Inform Assoc. 2006 Sep-Oct;13(5):497-507. Epub 2006 Jun 23.
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SaRAD: a Simple and Robust Abbreviation Dictionary.
Adar E.
Bioinformatics. 2004 Mar 1;20(4):527-33. Epub 2004 Jan 22.
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OSIRISv1.2: a named entity recognition system for sequence variants of genes in biomedical literature.
Furlong LI, Dach H, Hofmann-Apitius M, Sanz F.
BMC Bioinformatics. 2008 Feb 5;9:84.
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