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A new approach for the analysis of bacterial microarray-based Comparative Genomic Hybridization: insights from an empirical study.

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Extensive genomic diversity in pathogenic Escherichia coli and Shigella Strains revealed by comparative genomic hybridization microarray.

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CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data.

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ArrayOme: a program for estimating the sizes of microarray-visualized bacterial genomes.

Ou HY, Smith R, Lucchini S, Hinton J, Chaudhuri RR, Pallen M, Barer MR, Rajakumar K.

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Genome evolution in major Escherichia coli O157:H7 lineages.

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10:

Mixture models as a method to find present and divergent genes in comparative genomic hybridization studies on bacteria.

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Complexity of the genomic diversity in enterohemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai OligoDNA microarray and the Whole Genome PCR scanning.

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Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray.

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M-CGH: analysing microarray-based CGH experiments.

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SIGMA: a system for integrative genomic microarray analysis of cancer genomes.

Chari R, Lockwood WW, Coe BP, Chu A, Macey D, Thomson A, Davies JJ, MacAulay C, Lam WL.

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CGHPRO -- a comprehensive data analysis tool for array CGH.

Chen W, Erdogan F, Ropers HH, Lenzner S, Ullmann R.

BMC Bioinformatics. 2005 Apr 5;6:85.

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Using expression arrays for copy number detection: an example from E. coli.

Skvortsov D, Abdueva D, Stitzer ME, Finkel SE, Tavaré S.

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Optimal control and analysis of two-color genomotyping experiments using bacterial multistrain arrays.

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Large-scale comparative genomics meta-analysis of Campylobacter jejuni isolates reveals low level of genome plasticity.

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Normalization of array-CGH data: influence of copy number imbalances.

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DNA microarray for discrimination between pathogenic 0157:H7 EDL933 and non-pathogenic Escherichia coli strains.

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