Related Articles for PubMed (Select 18194581)

PhyloSort: a user-friendly phylogenetic sorting tool and its application to estimating the cyanobacterial contribution to the nuclear genome of Chlamydomonas.

Moustafa A, Bhattacharya D.

BMC Evol Biol. 2008 Jan 15;8:6.

PMID: 18194581 [PubMed - indexed for MEDLINE]

Genes of cyanobacterial origin in plant nuclear genomes point to a heterocyst-forming plastid ancestor.

Deusch O, Landan G, Roettger M, Gruenheit N, Kowallik KV, Allen JF, Martin W, Dagan T.

Mol Biol Evol. 2008 Apr;25(4):748-61. Epub 2008 Jan 24.

PMID: 18222943 [PubMed - indexed for MEDLINE]

Phylogenomic analysis identifies red algal genes of endosymbiotic origin in the chromalveolates.

Li S, Nosenko T, Hackett JD, Bhattacharya D.

Mol Biol Evol. 2006 Mar;23(3):663-74. Epub 2005 Dec 15.

PMID: 16357039 [PubMed - indexed for MEDLINE]

Evidence of a chimeric genome in the cyanobacterial ancestor of plastids.

Gross J, Meurer J, Bhattacharya D.

BMC Evol Biol. 2008 Apr 23;8:117.

PMID: 18433492 [PubMed - indexed for MEDLINE]

Cyanobacterial contribution to algal nuclear genomes is primarily limited to plastid functions.

Reyes-Prieto A, Hackett JD, Soares MB, Bonaldo MF, Bhattacharya D.

Curr Biol. 2006 Dec 5;16(23):2320-5.

PMID: 17141613 [PubMed - indexed for MEDLINE]

Origins of a cyanobacterial 6-phosphogluconate dehydrogenase in plastid-lacking eukaryotes.

Maruyama S, Misawa K, Iseki M, Watanabe M, Nozaki H.

BMC Evol Biol. 2008 May 17;8:151.

PMID: 18485228 [PubMed - indexed for MEDLINE]

Phylogeny of plastids based on cladistic analysis of gene loss inferred from complete plastid genome sequences.

Nozaki H, Ohta N, Matsuzaki M, Misumi O, Kuroiwa T.

J Mol Evol. 2003 Oct;57(4):377-82.

PMID: 14708571 [PubMed - indexed for MEDLINE]

Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids?

Huang J, Gogarten JP.

Genome Biol. 2007;8(6):R99.

PMID: 17547748 [PubMed - indexed for MEDLINE]

Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus.

Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, Leister D, Stoebe B, Hasegawa M, Penny D.

Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12246-51. Epub 2002 Sep 6.

PMID: 12218172 [PubMed - indexed for MEDLINE]

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Host origin of plastid solute transporters in the first photosynthetic eukaryotes.

Tyra HM, Linka M, Weber AP, Bhattacharya D.

Genome Biol. 2007;8(10):R212.

PMID: 17919328 [PubMed - indexed for MEDLINE]

11:

Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic.

Reyes-Prieto A, Moustafa A, Bhattacharya D.

Curr Biol. 2008 Jul 8;18(13):956-62.

PMID: 18595706 [PubMed - indexed for MEDLINE]

12:

Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum.

Huang J, Mullapudi N, Lancto CA, Scott M, Abrahamsen MS, Kissinger JC.

Genome Biol. 2004;5(11):R88. Epub 2004 Oct 19.

PMID: 15535864 [PubMed - indexed for MEDLINE]

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Reconstructing evolution: gene transfer from plastids to the nucleus.

Bock R, Timmis JN.

Bioessays. 2008 Jun;30(6):556-66. Review.

PMID: 18478535 [PubMed - indexed for MEDLINE]

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Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny.

Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM.

Mol Biol Evol. 2007 Aug;24(8):1832-42. Epub 2007 May 23.

PMID: 17522086 [PubMed - indexed for MEDLINE]

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Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis.

Frommolt R, Werner S, Paulsen H, Goss R, Wilhelm C, Zauner S, Maier UG, Grossman AR, Bhattacharya D, Lohr M.

Mol Biol Evol. 2008 Dec;25(12):2653-67. Epub 2008 Sep 17.

PMID: 18799712 [PubMed - indexed for MEDLINE]

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From phylogenetics to phylogenomics: the evolutionary relationships of insect endosymbiotic gamma-Proteobacteria as a test case.

Comas I, Moya A, González-Candelas F.

Syst Biol. 2007 Feb;56(1):1-16.

PMID: 17366133 [PubMed - indexed for MEDLINE]

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Plastid genes in a non-photosynthetic dinoflagellate.

Sanchez-Puerta MV, Lippmeier JC, Apt KE, Delwiche CF.

Protist. 2007 Jan;158(1):105-17. Epub 2006 Dec 5.

PMID: 17150410 [PubMed - indexed for MEDLINE]

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A phylogenomic approach for studying plastid endosymbiosis.

Moustafa A, Chan CX, Danforth M, Zear D, Ahmed H, Jadhav N, Savage T, Bhattacharya D.

Genome Inform. 2008;21:165-76.

PMID: 19425156 [PubMed - in process]

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Tertiary endosymbiosis driven genome evolution in dinoflagellate algae.

Yoon HS, Hackett JD, Van Dolah FM, Nosenko T, Lidie KL, Bhattacharya D.

Mol Biol Evol. 2005 May;22(5):1299-308. Epub 2005 Mar 2.

PMID: 15746017 [PubMed - indexed for MEDLINE]

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Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates.

Hackett JD, Yoon HS, Li S, Reyes-Prieto A, Rümmele SE, Bhattacharya D.

Mol Biol Evol. 2007 Aug;24(8):1702-13. Epub 2007 May 7.

PMID: 17488740 [PubMed - indexed for MEDLINE]

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