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Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide reductases.
Avila CL, Rapisarda VA, Farías RN, De Las Rivas J, Chehín R.
BMC Bioinformatics. 2007 Mar 16;8:96.
PMID: 17367536 [PubMed - indexed for MEDLINE]
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Motif extraction and protein classification.
Kunik V, Solan Z, Edelman S, Ruppin E, Horn D.
Proc IEEE Comput Syst Bioinform Conf. 2005:80-5.
PMID: 16447965 [PubMed - indexed for MEDLINE]
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Combined sequence and structure analysis of the fungal laccase family.
Kumar SV, Phale PS, Durani S, Wangikar PP.
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Pyranose oxidase identified as a member of the GMC oxidoreductase family.
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Conserved structural features in class I major fimbrial subunits (Pilin) in gram-negative bacteria. Molecular basis of classification in seven subfamilies and identification of intrasubfamily sequence signature motifs which might Be implicated in quaternary structure.
Girardeau JP, Bertin Y, Callebaut I.
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Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
Najmanovich R, Kurbatova N, Thornton J.
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Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure.
Song J, Yuan Z, Tan H, Huber T, Burrage K.
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Probabilistic annotation of protein sequences based on functional classifications.
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Prediction of protein structural class for the twilight zone sequences.
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SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.
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Short-chain dehydrogenases/reductases (SDRs).
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Evolutionary history of the alpha2,8-sialyltransferase (ST8Sia) gene family: tandem duplications in early deuterostomes explain most of the diversity found in the vertebrate ST8Sia genes.
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