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Items 1 - 20 of 164
of 9Next
1:

Integrated siRNA design based on surveying of features associated with high RNAi effectiveness.

Gong W, Ren Y, Xu Q, Wang Y, Lin D, Zhou H, Li T.

BMC Bioinformatics. 2006 Nov 27;7:516.

PMID: 17129386 [PubMed - indexed for MEDLINE]

2:

siDRM: an effective and generally applicable online siRNA design tool.

Gong W, Ren Y, Zhou H, Wang Y, Kang S, Li T.

Bioinformatics. 2008 Oct 15;24(20):2405-6. Epub 2008 Aug 20.

PMID: 18718944 [PubMed - indexed for MEDLINE]

3:

siRecords: a database of mammalian RNAi experiments and efficacies.

Ren Y, Gong W, Zhou H, Wang Y, Xiao F, Li T.

Nucleic Acids Res. 2009 Jan;37(Database issue):D146-9. Epub 2008 Nov 7.

PMID: 18996894 [PubMed - indexed for MEDLINE]

4:

The impact of target site accessibility on the design of effective siRNAs.

Tafer H, Ameres SL, Obernosterer G, Gebeshuber CA, Schroeder R, Martinez J, Hofacker IL.

Nat Biotechnol. 2008 May;26(5):578-83. Epub 2008 Apr 27.

PMID: 18438400 [PubMed - indexed for MEDLINE]

5:

An accurate and interpretable model for siRNA efficacy prediction.

Vert JP, Foveau N, Lajaunie C, Vandenbrouck Y.

BMC Bioinformatics. 2006 Nov 30;7:520.

PMID: 17137497 [PubMed - indexed for MEDLINE]

6:

RFRCDB-siRNA: improved design of siRNAs by random forest regression model coupled with database searching.

Jiang P, Wu H, Da Y, Sang F, Wei J, Sun X, Lu Z.

Comput Methods Programs Biomed. 2007 Sep;87(3):230-8. Epub 2007 Jul 17.

PMID: 17644215 [PubMed - indexed for MEDLINE]

7:

Computational models with thermodynamic and composition features improve siRNA design.

Shabalina SA, Spiridonov AN, Ogurtsov AY.

BMC Bioinformatics. 2006 Feb 12;7:65.

PMID: 16472402 [PubMed - indexed for MEDLINE]

8:

Sequence characteristics of functional siRNAs.

Jagla B, Aulner N, Kelly PD, Song D, Volchuk A, Zatorski A, Shum D, Mayer T, De Angelis DA, Ouerfelli O, Rutishauser U, Rothman JE.

RNA. 2005 Jun;11(6):864-72.

PMID: 15923373 [PubMed - indexed for MEDLINE]

9:

Criteria for effective design, construction, and gene knockdown by shRNA vectors.

Taxman DJ, Livingstone LR, Zhang J, Conti BJ, Iocca HA, Williams KL, Lich JD, Ting JP, Reed W.

BMC Biotechnol. 2006 Jan 24;6:7.

PMID: 16433925 [PubMed - indexed for MEDLINE]

10:

Filtering of ineffective siRNAs and improved siRNA design tool.

Yiu SM, Wong PW, Lam TW, Mui YC, Kung HF, Lin M, Cheung YT.

Bioinformatics. 2005 Jan 15;21(2):144-51. Epub 2004 Aug 27.

PMID: 15333460 [PubMed - indexed for MEDLINE]

11:

Demonstration of two novel methods for predicting functional siRNA efficiency.

Jia P, Shi T, Cai Y, Li Y.

BMC Bioinformatics. 2006 May 29;7:271.

PMID: 16729898 [PubMed - indexed for MEDLINE]

12:

An algorithm for selection of functional siRNA sequences.

Amarzguioui M, Prydz H.

Biochem Biophys Res Commun. 2004 Apr 16;316(4):1050-8.

PMID: 15044091 [PubMed - indexed for MEDLINE]

14:

sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database.

Shah JK, Garner HR, White MA, Shames DS, Minna JD.

BMC Bioinformatics. 2007 May 31;8:178.

PMID: 17540034 [PubMed - indexed for MEDLINE]

15:

Rational siRNA design for RNA interference.

Reynolds A, Leake D, Boese Q, Scaringe S, Marshall WS, Khvorova A.

Nat Biotechnol. 2004 Mar;22(3):326-30. Epub 2004 Feb 1.

PMID: 14758366 [PubMed - indexed for MEDLINE]

16:

Efficient prediction of siRNAs with siRNArules 1.0: an open-source JAVA approach to siRNA algorithms.

Holen T.

RNA. 2006 Sep;12(9):1620-5. Epub 2006 Jul 26.

PMID: 16870995 [PubMed - indexed for MEDLINE]

17:

Design and validation of siRNAs and shRNAs.

Tilesi F, Fradiani P, Socci V, Willems D, Ascenzioni F.

Curr Opin Mol Ther. 2009 Apr;11(2):156-64. Review.

PMID: 19330721 [PubMed - indexed for MEDLINE]

18:

AsiDesigner: exon-based siRNA design server considering alternative splicing.

Park YK, Park SM, Choi YC, Lee D, Won M, Kim YJ.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W97-103. Epub 2008 May 14.

PMID: 18480122 [PubMed - indexed for MEDLINE]

19:

Highly specific and accurate selection of siRNAs for high-throughput functional assays.

Santoyo J, Vaquerizas JM, Dopazo J.

Bioinformatics. 2005 Apr 15;21(8):1376-82. Epub 2004 Dec 10.

PMID: 15591357 [PubMed - indexed for MEDLINE]

20:

Accelerated off-target search algorithm for siRNA.

Yamada T, Morishita S.

Bioinformatics. 2005 Apr 15;21(8):1316-24. Epub 2004 Nov 25.

PMID: 15564304 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 164
of 9Next