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Items 1 - 20 of 451
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1:

Systematic assignment of thermodynamic constraints in metabolic network models.

Kümmel A, Panke S, Heinemann M.

BMC Bioinformatics. 2006 Nov 23;7:512.

PMID: 17123434 [PubMed - indexed for MEDLINE]

2:

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.

Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BØ.

Mol Syst Biol. 2007;3:121. Epub 2007 Jun 26.

PMID: 17593909 [PubMed - indexed for MEDLINE]

3:

Thermodynamics-based metabolic flux analysis.

Henry CS, Broadbelt LJ, Hatzimanikatis V.

Biophys J. 2007 Mar 1;92(5):1792-805. Epub 2006 Dec 15.

PMID: 17172310 [PubMed - indexed for MEDLINE]

4:

anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data.

Zamboni N, Kümmel A, Heinemann M.

BMC Bioinformatics. 2008 Apr 16;9:199.

PMID: 18416814 [PubMed - indexed for MEDLINE]

5:

Design and application of genome-scale reconstructed metabolic models.

Rocha I, Förster J, Nielsen J.

Methods Mol Biol. 2008;416:409-31.

PMID: 18392985 [PubMed - indexed for MEDLINE]

6:

A pivoting algorithm for metabolic networks in the presence of thermodynamic constraints.

Nigam R, Liang S.

Proc IEEE Comput Syst Bioinform Conf. 2005:259-67.

PMID: 16447983 [PubMed - indexed for MEDLINE]

7:

Optimization based automated curation of metabolic reconstructions.

Satish Kumar V, Dasika MS, Maranas CD.

BMC Bioinformatics. 2007 Jun 20;8:212.

PMID: 17584497 [PubMed - indexed for MEDLINE]

8:

Ab initio prediction of thermodynamically feasible reaction directions from biochemical network stoichiometry.

Yang F, Qian H, Beard DA.

Metab Eng. 2005 Jul;7(4):251-9.

PMID: 16140239 [PubMed - indexed for MEDLINE]

9:

Systematic analysis of conservation relations in Escherichia coli genome-scale metabolic network reveals novel growth media.

Imielinski M, Belta C, Rubin H, Halász A.

Biophys J. 2006 Apr 15;90(8):2659-72. Epub 2006 Feb 3. Erratum in: Biophys J. 2007 Jul 15;93(2):704.

PMID: 16461408 [PubMed - indexed for MEDLINE]

10:

Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis.

Senger RS, Papoutsakis ET.

Biotechnol Bioeng. 2008 Dec 1;101(5):1036-52.

PMID: 18767192 [PubMed - indexed for MEDLINE]

12:

Accelerating the reconstruction of genome-scale metabolic networks.

Notebaart RA, van Enckevort FH, Francke C, Siezen RJ, Teusink B.

BMC Bioinformatics. 2006 Jun 13;7:296.

PMID: 16772023 [PubMed - indexed for MEDLINE]

13:

Algorithm for perturbing thermodynamically infeasible metabolic networks.

Nigam R, Liang S.

Comput Biol Med. 2007 Feb;37(2):126-33. Epub 2006 Apr 17.

PMID: 16616911 [PubMed - indexed for MEDLINE]

14:

Genome-scale thermodynamic analysis of Escherichia coli metabolism.

Henry CS, Jankowski MD, Broadbelt LJ, Hatzimanikatis V.

Biophys J. 2006 Feb 15;90(4):1453-61. Epub 2005 Nov 18.

PMID: 16299075 [PubMed - indexed for MEDLINE]

15:

Estimating the size of the solution space of metabolic networks.

Braunstein A, Mulet R, Pagnani A.

BMC Bioinformatics. 2008 May 19;9:240.

PMID: 18489757 [PubMed - indexed for MEDLINE]

16:

Identification of genome-scale metabolic network models using experimentally measured flux profiles.

Herrgård MJ, Fong SS, Palsson BØ.

PLoS Comput Biol. 2006 Jul 7;2(7):e72. Epub 2006 May 10.

PMID: 16839195 [PubMed - indexed for MEDLINE]

17:

Computing chemical organizations in biological networks.

Centler F, Kaleta C, di Fenizio PS, Dittrich P.

Bioinformatics. 2008 Jul 15;24(14):1611-8. Epub 2008 May 14.

PMID: 18480100 [PubMed - indexed for MEDLINE]

18:

Extraction of elementary rate constants from global network analysis of E. coli central metabolism.

Zhao J, Ridgway D, Broderick G, Kovalenko A, Ellison M.

BMC Syst Biol. 2008 May 7;2:41.

PMID: 18462493 [PubMed - indexed for MEDLINE]

19:

Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data.

Kümmel A, Panke S, Heinemann M.

Mol Syst Biol. 2006;2:2006.0034. Epub 2006 Jun 20.

PMID: 16788595 [PubMed - indexed for MEDLINE]

20:

Toward the automated generation of genome-scale metabolic networks in the SEED.

DeJongh M, Formsma K, Boillot P, Gould J, Rycenga M, Best A.

BMC Bioinformatics. 2007 Apr 26;8:139.

PMID: 17462086 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 451
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