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Dendroscope: An interactive viewer for large phylogenetic trees.

Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, Rupp R.

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GeneTools--application for functional annotation and statistical hypothesis testing.

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ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.

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Paloverde: an OpenGL 3D phylogeny browser.

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primetv: a viewer for reconciled trees.

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PhyloFinder: an intelligent search engine for phylogenetic tree databases.

Chen D, Burleigh JG, Bansal MS, Fernández-Baca D.

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VisualRepbase: an interface for the study of occurrences of transposable element families.

Tempel S, Jurka M, Jurka J.

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A novel method for large tree visualization.

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Visualising very large phylogenetic trees in three dimensional hyperbolic space.

Hughes T, Hyun Y, Liberles DA.

BMC Bioinformatics. 2004 Apr 29;5:48.

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14:

TaxMan: a taxonomic database manager.

Jones M, Blaxter M.

BMC Bioinformatics. 2006 Dec 18;7:536.

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15:

PhyloExplorer: a web server to validate, explore and query phylogenetic trees.

Ranwez V, Clairon N, Delsuc F, Pourali S, Auberval N, Diser S, Berry V.

BMC Evol Biol. 2009 May 18;9:108.

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PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

Hanekamp K, Bohnebeck U, Beszteri B, Valentin K.

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Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D.

Porollo A, Meller J.

BMC Bioinformatics. 2007 Aug 29;8:316.

PMID: 17727718 [PubMed - indexed for MEDLINE]

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PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments.

Usadel B, Nagel A, Steinhauser D, Gibon Y, Bläsing OE, Redestig H, Sreenivasulu N, Krall L, Hannah MA, Poree F, Fernie AR, Stitt M.

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Visualizing phylogenetic trees using TreeView.

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Eval: a software package for analysis of genome annotations.

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