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Selecting additional tag SNPs for tolerating missing data in genotyping.
Huang YT, Zhang K, Chen T, Chao KM.
BMC Bioinformatics. 2005 Nov 1;6:263.
PMID: 16259642 [PubMed - indexed for MEDLINE]
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Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies.
Zhang K, Qin ZS, Liu JS, Chen T, Waterman MS, Sun F.
Genome Res. 2004 May;14(5):908-16. Epub 2004 Apr 12.
PMID: 15078859 [PubMed - indexed for MEDLINE]
Haplotype block structure and its applications to association studies: power and study designs.
Zhang K, Calabrese P, Nordborg M, Sun F.
Am J Hum Genet. 2002 Dec;71(6):1386-94. Epub 2002 Nov 18.
PMID: 12439824 [PubMed - indexed for MEDLINE]
Inference of missing SNPs and information quantity measurements for haplotype blocks.
Su SC, Kuo CC, Chen T.
Bioinformatics. 2005 May 1;21(9):2001-7. Epub 2005 Feb 4.
PMID: 15699029 [PubMed - indexed for MEDLINE]
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Effective algorithms for tag SNP selection.
Liu TF, Sung WK, Li Y, Liu JJ, Mittal A, Mao PL.
J Bioinform Comput Biol. 2005 Oct;3(5):1089-106.
PMID: 16278949 [PubMed - indexed for MEDLINE]
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Tag SNP selection in genotype data for maximizing SNP prediction accuracy.
Halperin E, Kimmel G, Shamir R.
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A greedier approach for finding tag SNPs.
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The impact of missing and erroneous genotypes on tagging SNP selection and power of subsequent association tests.
Liu W, Zhao W, Chase GA.
Hum Hered. 2006;61(1):31-44. Epub 2006 Mar 23.
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HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms.
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htSNPer1.0: software for haplotype block partition and htSNPs selection.
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Defining haplotype blocks and tag single-nucleotide polymorphisms in the human genome.
Schulze TG, Zhang K, Chen YS, Akula N, Sun F, McMahon FJ.
Hum Mol Genet. 2004 Feb 1;13(3):335-42. Epub 2003 Dec 17.
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Assessing the power of tag SNPs in the mapping of quantitative trait loci (QTL) with extremal and random samples.
Zhang K, Sun F.
BMC Genet. 2005 Oct 19;6:51.
PMID: 16236175 [PubMed - indexed for MEDLINE]
Power-based, phase-informed selection of single nucleotide polymorphisms for disease association screens.
Saccone SF, Rice JP, Saccone NL.
Genet Epidemiol. 2006 Sep;30(6):459-70.
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Informative SNP selection methods based on SNP prediction.
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A model-based approach to selection of tag SNPs.
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A new framework for the selection of tag SNPs by multimarker haplotypes.
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J Biomed Inform. 2008 Dec;41(6):953-61. Epub 2008 Apr 12.
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Analysis of concordance of different haplotype block partitioning algorithms.
Indap AR, Marth GT, Struble CA, Tonellato P, Olivier M.
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Computing the minimum recombinant haplotype configuration from incomplete genotype data on a pedigree by integer linear programming.
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Efficient selective screening of haplotype tag SNPs.
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