Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on
Automated generation of heuristics for biological sequence comparison.
Slater GS, Birney E.
BMC Bioinformatics. 2005 Feb 15;6:31.
PMID: 15713233 [PubMed - indexed for MEDLINE]
Related Articles Free article in PMC | at journal site
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR.
BMC Bioinformatics. 2005 Jun 22;6:156.
PMID: 15969769 [PubMed - indexed for MEDLINE]
ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches.
Rognes T.
Nucleic Acids Res. 2001 Apr 1;29(7):1647-52.
PMID: 11266569 [PubMed - indexed for MEDLINE]
Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals.
Reneker J, Shyu CR.
BMC Bioinformatics. 2005 May 3;6:111.
PMID: 15869708 [PubMed - indexed for MEDLINE]
Efficient decoding algorithms for generalized hidden Markov model gene finders.
Majoros WH, Pertea M, Delcher AL, Salzberg SL.
BMC Bioinformatics. 2005 Jan 24;6:16.
PMID: 15667658 [PubMed - indexed for MEDLINE]
Dynamic programming algorithms for biological sequence comparison.
Pearson WR, Miller W.
Methods Enzymol. 1992;210:575-601.
PMID: 1584052 [PubMed - indexed for MEDLINE]
Related Articles
Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator.
Garcia Castro A, Thoraval S, Garcia LJ, Ragan MA.
BMC Bioinformatics. 2005 Apr 7;6:87.
PMID: 15813976 [PubMed - indexed for MEDLINE]
DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment.
Subramanian AR, Weyer-Menkhoff J, Kaufmann M, Morgenstern B.
BMC Bioinformatics. 2005 Mar 22;6:66.
PMID: 15784139 [PubMed - indexed for MEDLINE]
Computation and analysis of genomic multi-sequence alignments.
Blanchette M.
Annu Rev Genomics Hum Genet. 2007;8:193-213. Review.
PMID: 17489682 [PubMed - indexed for MEDLINE]
A genetic algorithm for multiple molecular sequence alignment.
Zhang C, Wong AK.
Comput Appl Biosci. 1997 Dec;13(6):565-81.
PMID: 9475984 [PubMed - indexed for MEDLINE]
SNPHunter: a bioinformatic software for single nucleotide polymorphism data acquisition and management.
Wang L, Liu S, Niu T, Xu X.
BMC Bioinformatics. 2005 Mar 18;6:60.
PMID: 15774022 [PubMed - indexed for MEDLINE]
Optimised fine and coarse parallelism for sequence homology search.
Meng X, Chaudhary V.
Int J Bioinform Res Appl. 2006;2(4):430-41.
PMID: 18048183 [PubMed - indexed for MEDLINE]
Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalised Data Structures.
Koehler J, Rawlings C, Verrier P, Mitchell R, Skusa A, Ruegg A, Philippi S.
In Silico Biol. 2005;5(1):33-44.
PMID: 15972003 [PubMed - indexed for MEDLINE]
Related Articles Free article at journal site
MBEToolbox: a MATLAB toolbox for sequence data analysis in molecular biology and evolution.
Cai JJ, Smith DK, Xia X, Yuen KY.
BMC Bioinformatics. 2005 Mar 22;6:64.
PMID: 15780146 [PubMed - indexed for MEDLINE]
JIGSAW: integration of multiple sources of evidence for gene prediction.
Allen JE, Salzberg SL.
Bioinformatics. 2005 Sep 15;21(18):3596-603. Epub 2005 Aug 2.
PMID: 16076884 [PubMed - indexed for MEDLINE]
SeqHelp: a program to analyze molecular sequences utilizing common computational resources.
Lee MK, Lynch ED, King MC.
Genome Res. 1998 Mar;8(3):306-12.
PMID: 9521933 [PubMed - indexed for MEDLINE]
Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN).
Beaussart F, Weiner J 3rd, Bornberg-Bauer E.
Bioinformatics. 2007 Jul 15;23(14):1834-6. Epub 2007 May 5.
PMID: 17483506 [PubMed - indexed for MEDLINE]
ParPEST: a pipeline for EST data analysis based on parallel computing.
D'Agostino N, Aversano M, Chiusano ML.
BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S9.
PMID: 16351758 [PubMed - indexed for MEDLINE]
An iterative method for faster sum-of-pairs multiple sequence alignment.
Reinert K, Stoye J, Will T.
Bioinformatics. 2000 Sep;16(9):808-14.
PMID: 11108703 [PubMed - indexed for MEDLINE]
HMMoC--a compiler for hidden Markov models.
Lunter G.
Bioinformatics. 2007 Sep 15;23(18):2485-7. Epub 2007 Jul 10.
PMID: 17623703 [PubMed - indexed for MEDLINE]