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1: SMO smoothened homolog (Drosophila) [ Homo sapiens ]

GeneID: 6608 updated 05-Jul-2009

[Top][Help]Summary

Official Symbol
SMOprovided by HGNC
Official Full Name
smoothened homolog (Drosophila)provided by HGNC
Primary source
HGNC:11119
See related
Ensembl:ENSG00000128602; HPRD:03294; MIM:601500
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Gx; SMOH; SMO

[Top][Help]Genomic regions, transcripts, and products

Go to reference sequence detailsTry our new Sequence Viewer




Genomic context[Top][Help]

chromosome: 7; Location: 7q32.3See SMO in MapViewer

[Top][Help]Bibliography

Related Articles in PubMed

GeneRIFs: Gene References Into FunctionWhat's a GeneRIF?

PubMed 1. The interactions of small molecule agonists and antagonists with SMO were characterized.
PubMed 2. Observational study of gene-disease association. (HuGE Navigator)
PubMed 3. Observational study of gene-disease association and gene-environment interaction. (HuGE Navigator)
PubMed 4. Observational study of gene-disease association, gene-gene interaction, and gene-environment interaction. (HuGE Navigator)
PubMed 5. Constitutive activation of the hedgehog signaling pathway in chondrosarcoma is rarely caused by SMO protein mutation.
PubMed 6. mutations are rare in SMO in sporadic and nevoid basal cell carcinoma syndrome-associated keratocystic odontogenic tumors
PubMed 7. Smo mutants augment p53 binding to the E3 ubiquitin-protein ligase Mdm2 and promote p53 ubiquitination.
PubMed 8. Significantly high levels of ultraviolet-specific mutations in the smoothened gene are found in basal cell carcinomas from DNA repair-deficient xeroderma pigmentosum patients.
PubMed 9. beta-Arrestin 2 and GRK2 are potential mediators of signaling by activated Smoothened
PubMed 10. the upstream part of the Hedgehog pathway involving Hedgehog interaction with Patched, regulation of Smoothened by Patched, and Smoothened enrichment at the plasma membrane is highly conserved between Drosophila and humans
PubMed 11. results suggest that the Ptc tumour suppressor functions normally as a transmembrane molecular transporter, which acts indirectly to inhibit Smo activity
PubMed 12. aberrant expressions of PTCH and Smo were common in pancreatic carcinoma tissues & were associated with low-level differentiation of tumor tissue & hyperglycemia; this indicated that these molecules played a fundamental role in pancreas tumorigenesis
PubMed 13. overexpression and/or tumorigenic activation of the Smo proto-oncogene mediates c-myc overexpression which plays a critical role in hepatocarcinogenesis; study suggests that Smo is a prognostic factor in HCC tumorigenesis
PubMed 14. smoothened expression in human astrocytic tumors inversely correlates with histological malignancy
PubMed 15. role of the human M2SMO mutant in BCC development in adult transgenic mice
PubMed 16. analysis of Hedgehog modulator properties after functional coupling of Smoothened to G15

[Top][Help]Interactions

Description ..........
  Product Interactant Other Gene Complex Source Pubs          
Beta-arr2 interacts with Smo. This interaction was modeled on a demonstrated interaction between Beta-arr2 and Smo both from an unspecified species.
  NP_005622.1     ARRB2     BIND   PubMed
 
  NP_005622.1   NP_000255.1   PTCH1     HPRD   PubMed
 
  NP_005622.1   Patched 2   PTCH2     HPRD   PubMed
Affinity Capture-Western
  BioGRID:112492   BioGRID:111699   PTCH1     BioGRID   PubMed
Affinity Capture-Western
  BioGRID:112492   BioGRID:114195   PTCH2     BioGRID   PubMed

[Top][Help]General gene information

Markers

MARC_16819-16820:1021560442:1(e-PCR)
Links: UniSTS:268130
RH121944(e-PCR)
Links: UniSTS:95082
Alternate names: SHGC-34250; WIAF-2651-STS
RH12557(e-PCR)
Links: UniSTS:37016
Alternate name: stSG4099
RH16231(e-PCR)
Links: UniSTS:31427
Alternate name: stSG8392
SMO_853(e-PCR)
Links: UniSTS:277755
SMO_V157(e-PCR)
Links: UniSTS:277755

Phenotypes

Basal cell carcinoma, somatic
MIM: 601500

Pathways

KEGG pathway: Basal cell carcinoma
05217
KEGG pathway: Hedgehog signaling pathway
04340

Homology

Mouse, Rat
Map Viewer

GeneOntology Provided by GOA

Component Evidence
cilium IEA
integral to membrane
PubMed 9422511
TAS PubMed
membrane IEA

[Top][Help]General protein information

Preferred Names
smoothened
Names
smoothened
seven transmembrane helix receptor

[Top][Help]NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

mRNA and Protein(s)

  1. NM_005631.3NP_005622.1 smoothened

    Source sequence(s)
    BC009989
    Consensus CDS
    CCDS5811.1
    UniProtKB/TrEMBL
    A4D1K5
    UniProtKB/Swiss-Prot
    Q99835
    Conserved Domains (3) summary
    pfam01534
    Location:220554
    Blast Score:1152
    Frizzled; Frizzled/Smoothened family membrane region
    cl09373
    Location:272433
    Blast Score:97
    7tm_2; 7 transmembrane receptor (Secretin family)
    cl02447
    Location:70181
    Blast Score:322
    Fz; Fz domain

RefSeqs of Annotated Genomes: Build 37.1

The following sections contain reference sequences that belong to a specific genome build. Explain

Genome Reference Consortium Human Build 37 (GRCh37), Primary_Assembly

Genomic

  1. NC_000007.13 Genome Reference Consortium Human Build 37 (GRCh37), Primary_Assembly

    Range
    128828713..128853386
    Download
    GenBank  FASTA Sequence Viewer (Graphics)
  2. NT_007933.15

    Range
    66861556..66886229
    Download
    GenBank  FASTA Sequence Viewer (Graphics)

Alternate assembly (CRA_TCAGchr7v2)

Genomic

  1. AC_000068.1 Alternate assembly (CRA_TCAGchr7v2)

    Range
    128212668..128237345
    Download
    GenBank  FASTA Sequence Viewer (Graphics)
  2. NT_079596.2

    Range
    28248236..28272913
    Download
    GenBank  FASTA Sequence Viewer (Graphics)

Alternate assembly (Celera)

Genomic

  1. AC_000050.1 Alternate assembly (Celera)

    Range
    123625432..123650109
    Download
    GenBank  FASTA Sequence Viewer (Graphics)
  2. NW_923640.1

    Range
    26384183..26408860
    Download
    GenBank  FASTA Sequence Viewer (Graphics)

Alternate assembly (HuRef)

Genomic

  1. AC_000139.1 Alternate assembly (HuRef)

    Range
    123214627..123189939, complement
    Download
    GenBank  FASTA Sequence Viewer (Graphics)
  2. NW_001839071.2

    Range
    2464576..2439888, complement
    Download
    GenBank  FASTA Sequence Viewer (Graphics)

[Top][Help]Related Sequences

Nucleotide   Protein
Genomic   AB065574.1   BAC05807.1
Genomic   AC011005.7 (114387..139060)    None
Genomic   AF114821.1   AAD17202.1
Genomic   CH236950.1   EAL24102.1
Genomic   CH471070.1   EAW83715.1
mRNA   AF071494.1   AAC24863.1
mRNA   AF089720.1    None
mRNA   AF120103.1   AAF31757.1
mRNA   AF130867.1   AAD28625.1
mRNA   BC004332.1    None
mRNA   BC009989.2   AAH09989.1
mRNA   U84401.1   AAB41788.1
Synthetic   DQ896647.2   ABM87646.1
Protein Accession   Links
Q8NH34   GenPept   UniProtKB/TrEMBL
Q99835.1   GenPept   UniProtKB/Swiss-Prot
Q9Y2Y5   GenPept   UniProtKB/TrEMBL