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Results: 20

1.

A drosophila genetic resource of mutants to study mechanisms underlying human genetic diseases.

Yamamoto S, Jaiswal M, Charng WL, Gambin T, Karaca E, Mirzaa G, Wiszniewski W, Sandoval H, Haelterman NA, Xiong B, Zhang K, Bayat V, David G, Li T, Chen K, Gala U, Harel T, Pehlivan D, Penney S, Vissers LE, de Ligt J, Jhangiani SN, Xie Y, Tsang SH, Parman Y, Sivaci M, Battaloglu E, Muzny D, Wan YW, Liu Z, Lin-Moore AT, Clark RD, Curry CJ, Link N, Schulze KL, Boerwinkle E, Dobyns WB, Allikmets R, Gibbs RA, Chen R, Lupski JR, Wangler MF, Bellen HJ.

Cell. 2014 Sep 25;159(1):200-14. doi: 10.1016/j.cell.2014.09.002.

PMID:
25259927
[PubMed - in process]
2.

Serine catabolism regulates mitochondrial redox control during hypoxia.

Ye J, Fan J, Venneti S, Wan YW, Pawel BR, Zhang J, Finley LW, Lu C, Lindsten T, Cross JR, Qing G, Liu Z, Simon MC, Rabinowitz JD, Thompson CB.

Cancer Discov. 2014 Dec;4(12):1406-17. doi: 10.1158/2159-8290.CD-14-0250. Epub 2014 Sep 3.

PMID:
25186948
[PubMed - in process]
3.

Molecular pathway identification using biological network-regularized logistic models.

Zhang W, Wan YW, Allen GI, Pang K, Anderson ML, Liu Z.

BMC Genomics. 2013;14 Suppl 8:S7. doi: 10.1186/1471-2164-14-S8-S7. Epub 2013 Dec 9.

PMID:
24564637
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

On the reproducibility of TCGA ovarian cancer microRNA profiles.

Wan YW, Mach CM, Allen GI, Anderson ML, Liu Z.

PLoS One. 2014 Jan 29;9(1):e87782. doi: 10.1371/journal.pone.0087782. eCollection 2014.

PMID:
24489963
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Combinatorial therapy discovery using mixed integer linear programming.

Pang K, Wan YW, Choi WT, Donehower LA, Sun J, Pant D, Liu Z.

Bioinformatics. 2014 May 15;30(10):1456-63. doi: 10.1093/bioinformatics/btu046. Epub 2014 Jan 24.

PMID:
24463180
[PubMed - indexed for MEDLINE]
6.

NLRP7 affects trophoblast lineage differentiation, binds to overexpressed YY1 and alters CpG methylation.

Mahadevan S, Wen S, Wan YW, Peng HH, Otta S, Liu Z, Iacovino M, Mahen EM, Kyba M, Sadikovic B, Van den Veyver IB.

Hum Mol Genet. 2014 Feb 1;23(3):706-16. doi: 10.1093/hmg/ddt457. Epub 2013 Sep 18.

PMID:
24105472
[PubMed - indexed for MEDLINE]
7.

A Local Poisson Graphical Model for inferring networks from sequencing data.

Allen GI, Liu Z.

IEEE Trans Nanobioscience. 2013 Sep;12(3):189-98. doi: 10.1109/TNB.2013.2263838. Epub 2013 Aug 15.

PMID:
23955777
[PubMed - indexed for MEDLINE]
8.

Expression and functional pathway analysis of nuclear receptor NR2F2 in ovarian cancer.

Hawkins SM, Loomans HA, Wan YW, Ghosh-Choudhury T, Coffey D, Xiao W, Liu Z, Sangi-Haghpeykar H, Anderson ML.

J Clin Endocrinol Metab. 2013 Jul;98(7):E1152-62. doi: 10.1210/jc.2013-1081. Epub 2013 May 20.

PMID:
23690307
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Digital sorting of complex tissues for cell type-specific gene expression profiles.

Zhong Y, Wan YW, Pang K, Chow LM, Liu Z.

BMC Bioinformatics. 2013 Mar 7;14:89. doi: 10.1186/1471-2105-14-89.

PMID:
23497278
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Human-specific regulation of MeCP2 levels in fetal brains by microRNA miR-483-5p.

Han K, Gennarino VA, Lee Y, Pang K, Hashimoto-Torii K, Choufani S, Raju CS, Oldham MC, Weksberg R, Rakic P, Liu Z, Zoghbi HY.

Genes Dev. 2013 Mar 1;27(5):485-90. doi: 10.1101/gad.207456.112. Epub 2013 Feb 21.

PMID:
23431031
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Gene expression deconvolution in linear space.

Zhong Y, Liu Z.

Nat Methods. 2011 Dec 28;9(1):8-9; author reply 9. doi: 10.1038/nmeth.1830. No abstract available.

PMID:
22205510
[PubMed - indexed for MEDLINE]
12.

Mechanisms of FUS1/TUSC2 deficiency in mesothelioma and its tumorigenic transcriptional effects.

Ivanova AV, Ivanov SV, Prudkin L, Nonaka D, Liu Z, Tsao A, Wistuba I, Roth J, Pass HI.

Mol Cancer. 2009 Oct 24;8:91. doi: 10.1186/1476-4598-8-91.

PMID:
19852844
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The Snf1-related kinase, Hunk, is essential for mammary tumor metastasis.

Wertheim GB, Yang TW, Pan TC, Ramne A, Liu Z, Gardner HP, Dugan KD, Kristel P, Kreike B, van de Vijver MJ, Cardiff RD, Reynolds C, Chodosh LA.

Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15855-60. doi: 10.1073/pnas.0906993106. Epub 2009 Aug 28.

PMID:
19717424
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Singular value decomposition-based regression identifies activation of endogenous signaling pathways in vivo.

Liu Z, Wang M, Alvarez JV, Bonney ME, Chen CC, D'Cruz C, Pan TC, Tadesse MG, Chodosh LA.

Genome Biol. 2008;9(12):R180. doi: 10.1186/gb-2008-9-12-r180. Epub 2008 Dec 18.

PMID:
19094238
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Sequence space coverage, entropy of genomes and the potential to detect non-human DNA in human samples.

Liu Z, Venkatesh SS, Maley CC.

BMC Genomics. 2008 Oct 30;9:509. doi: 10.1186/1471-2164-9-509.

PMID:
18973670
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Asbestos exposure, pleural mesothelioma, and serum osteopontin levels.

Pass HI, Lott D, Lonardo F, Harbut M, Liu Z, Tang N, Carbone M, Webb C, Wali A.

N Engl J Med. 2005 Oct 13;353(15):1564-73.

PMID:
16221779
[PubMed - indexed for MEDLINE]
Free Article
17.

In silico and wet-bench identification of nuclear matrix attachment regions.

Krawetz SA, Draghici S, Goodrich R, Liu Z, Ostermeier GC.

Methods Mol Med. 2005;108:439-58.

PMID:
16028699
[PubMed - indexed for MEDLINE]
18.

Gene expression profiles predict survival and progression of pleural mesothelioma.

Pass HI, Liu Z, Wali A, Bueno R, Land S, Lott D, Siddiq F, Lonardo F, Carbone M, Draghici S.

Clin Cancer Res. 2004 Feb 1;10(3):849-59.

PMID:
14871960
[PubMed - indexed for MEDLINE]
Free Article
19.

Determination of fatty acid levels in erythrocyte membranes of patients with chronic fatigue syndrome.

Liu Z, Wang D, Xue Q, Chen J, Li Y, Bai X, Chang L.

Nutr Neurosci. 2003 Dec;6(6):389-92.

PMID:
14744043
[PubMed - indexed for MEDLINE]
20.

Nuclear matrix association of the human beta-globin locus utilizing a novel approach to quantitative real-time PCR.

Ostermeier GC, Liu Z, Martins RP, Bharadwaj RR, Ellis J, Draghici S, Krawetz SA.

Nucleic Acids Res. 2003 Jun 15;31(12):3257-66.

PMID:
12799453
[PubMed - indexed for MEDLINE]
Free PMC Article

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