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Results: 1 to 20 of 115

1.

A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversity.

Sengoelge G, Winnicki W, Kupczok A, von Haeseler A, Schuster M, Pfaller W, Jennings P, Weltermann A, Blake S, Sunder-Plassmann G.

BMC Genomics. 2014 Aug 27;15(1):725. doi: 10.1186/1471-2164-15-725.

PMID:
25163811
[PubMed - in process]
Free PMC Article
2.

Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria.

Kaschner M, Loeschcke A, Krause J, Minh BQ, Heck A, Endres S, Svensson V, Wirtz A, von Haeseler A, Jaeger KE, Drepper T, Krauss U.

Mol Microbiol. 2014 Sep;93(5):1066-78. doi: 10.1111/mmi.12719. Epub 2014 Aug 5.

PMID:
25039543
[PubMed - in process]
3.

SNP2GO: functional analysis of genome-wide association studies.

Szkiba D, Kapun M, von Haeseler A, Gallach M.

Genetics. 2014 May;197(1):285-9. doi: 10.1534/genetics.113.160341. Epub 2014 Feb 21.

PMID:
24561481
[PubMed - in process]
4.

The evolution of the ribosome biogenesis pathway from a yeast perspective.

Ebersberger I, Simm S, Leisegang MS, Schmitzberger P, Mirus O, von Haeseler A, Bohnsack MT, Schleiff E.

Nucleic Acids Res. 2014 Feb;42(3):1509-23. doi: 10.1093/nar/gkt1137. Epub 2013 Nov 14.

PMID:
24234440
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects.

Dell'Ampio E, Meusemann K, Szucsich NU, Peters RS, Meyer B, Borner J, Petersen M, Aberer AJ, Stamatakis A, Walzl MG, Minh BQ, von Haeseler A, Ebersberger I, Pass G, Misof B.

Mol Biol Evol. 2014 Jan;31(1):239-49. doi: 10.1093/molbev/mst196. Epub 2013 Oct 18.

PMID:
24140757
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

NextGenMap: fast and accurate read mapping in highly polymorphic genomes.

Sedlazeck FJ, Rescheneder P, von Haeseler A.

Bioinformatics. 2013 Nov 1;29(21):2790-1. doi: 10.1093/bioinformatics/btt468. Epub 2013 Aug 23.

PMID:
23975764
[PubMed - indexed for MEDLINE]
7.

State-of the art methodologies dictate new standards for phylogenetic analysis.

Anisimova M, Liberles DA, Philippe H, Provan J, Pupko T, von Haeseler A.

BMC Evol Biol. 2013 Aug 1;13:161. doi: 10.1186/1471-2148-13-161. Review.

PMID:
23914788
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Exploring the sampling universe of RNA-seq.

Tauber S, von Haeseler A.

Stat Appl Genet Mol Biol. 2013 Apr 16;12(2):175-88. doi: 10.1515/sagmb-2012-0049.

PMID:
23629158
[PubMed - indexed for MEDLINE]
9.

Updating benchtop sequencing performance comparison.

J√ľnemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D.

Nat Biotechnol. 2013 Apr;31(4):294-6. doi: 10.1038/nbt.2522. No abstract available. Erratum in: Nat Biotechnol. 2013 Dec;31(12):1148.

PMID:
23563421
[PubMed - indexed for MEDLINE]
10.

Ultrafast approximation for phylogenetic bootstrap.

Minh BQ, Nguyen MA, von Haeseler A.

Mol Biol Evol. 2013 May;30(5):1188-95. doi: 10.1093/molbev/mst024. Epub 2013 Feb 15.

PMID:
23418397
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Benefit-of-doubt (BOD) scoring: a sequencing-based method for SNP candidate assessment from high to medium read number data sets.

Sedlazeck FJ, Talloji P, von Haeseler A, Bachmair A.

Genomics. 2013 Mar;101(3):204-9. doi: 10.1016/j.ygeno.2012.12.001. Epub 2012 Dec 12.

PMID:
23246509
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

On the group theoretical background of assigning stepwise mutations onto phylogenies.

Fischer M, Klaere S, Thi Nguyen MA, von Haeseler A.

Algorithms Mol Biol. 2012 Dec 15;7(1):36. doi: 10.1186/1748-7188-7-36.

PMID:
23241267
[PubMed]
Free PMC Article
13.

NGC: lossless and lossy compression of aligned high-throughput sequencing data.

Popitsch N, von Haeseler A.

Nucleic Acids Res. 2013 Jan 7;41(1):e27. doi: 10.1093/nar/gks939. Epub 2012 Oct 12.

PMID:
23066097
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Advanced methylome analysis after bisulfite deep sequencing: an example in Arabidopsis.

Dinh HQ, Dubin M, Sedlazeck FJ, Lettner N, Mittelsten Scheid O, von Haeseler A.

PLoS One. 2012;7(7):e41528. doi: 10.1371/journal.pone.0041528. Epub 2012 Jul 20.

PMID:
22911809
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

TreeSnatcher plus: capturing phylogenetic trees from images.

Laubach T, von Haeseler A, Lercher MJ.

BMC Bioinformatics. 2012 May 24;13:110. doi: 10.1186/1471-2105-13-110.

PMID:
22624611
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Identification of an ancient haemophilia A splice site mutation.

Reitter-Pfoertner S, von Haeseler A, Horvath B, Sunder-Plassmann R, Tiedje V, Pabinger I, Mannhalter C.

Thromb Res. 2012 Sep;130(3):445-50. doi: 10.1016/j.thromres.2012.02.008. Epub 2012 Mar 6.

PMID:
22401796
[PubMed - indexed for MEDLINE]
17.

REvolver: modeling sequence evolution under domain constraints.

Koestler T, von Haeseler A, Ebersberger I.

Mol Biol Evol. 2012 Sep;29(9):2133-45. doi: 10.1093/molbev/mss078. Epub 2012 Mar 1.

PMID:
22383532
[PubMed - indexed for MEDLINE]
Free Article
18.

Do we still need supertrees?

von Haeseler A.

BMC Biol. 2012 Feb 27;10:13. doi: 10.1186/1741-7007-10-13.

PMID:
22369571
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs.

Vesely C, Tauber S, Sedlazeck FJ, von Haeseler A, Jantsch MF.

Genome Res. 2012 Aug;22(8):1468-76. doi: 10.1101/gr.133025.111. Epub 2012 Feb 6.

PMID:
22310477
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A consistent phylogenetic backbone for the fungi.

Ebersberger I, de Matos Simoes R, Kupczok A, Gube M, Kothe E, Voigt K, von Haeseler A.

Mol Biol Evol. 2012 May;29(5):1319-34. doi: 10.1093/molbev/msr285. Epub 2011 Nov 22.

PMID:
22114356
[PubMed - indexed for MEDLINE]
Free PMC Article

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