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Items: 1 to 20 of 129

1.

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices.

Chernomor O, von Haeseler A, Minh BQ.

Syst Biol. 2016 Apr 26. pii: syw037. [Epub ahead of print]

PMID:
27121966
2.

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis.

Trifinopoulos J, Nguyen LT, von Haeseler A, Minh BQ.

Nucleic Acids Res. 2016 Apr 15. pii: gkw256. [Epub ahead of print]

3.

Separable Roles for a Caenorhabditis elegans RMI1 Homolog in Promoting and Antagonizing Meiotic Crossovers Ensure Faithful Chromosome Inheritance.

Jagut M, Hamminger P, Woglar A, Millonigg S, Paulin L, Mikl M, Dello Stritto MR, Tang L, Habacher C, Tam A, Gallach M, von Haeseler A, Villeneuve AM, Jantsch V.

PLoS Biol. 2016 Mar 24;14(3):e1002412. doi: 10.1371/journal.pbio.1002412. eCollection 2016 Mar.

4.

A-type lamins bind both hetero- and euchromatin, the latter being regulated by lamina-associated polypeptide 2 alpha.

Gesson K, Rescheneder P, Skoruppa MP, von Haeseler A, Dechat T, Foisner R.

Genome Res. 2016 Apr;26(4):462-73. doi: 10.1101/gr.196220.115. Epub 2016 Jan 21.

5.

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data.

Smolka M, Rescheneder P, Schatz MC, von Haeseler A, Sedlazeck FJ.

Genome Biol. 2015 Oct 22;16:235. doi: 10.1186/s13059-015-0803-1.

6.

The Candida albicans Histone Acetyltransferase Hat1 Regulates Stress Resistance and Virulence via Distinct Chromatin Assembly Pathways.

Tscherner M, Zwolanek F, Jenull S, Sedlazeck FJ, Petryshyn A, Frohner IE, Mavrianos J, Chauhan N, von Haeseler A, Kuchler K.

PLoS Pathog. 2015 Oct 16;11(10):e1005218. doi: 10.1371/journal.ppat.1005218. eCollection 2015 Oct.

7.

Consequences of Common Topological Rearrangements for Partition Trees in Phylogenomic Inference.

Chernomor O, Minh BQ, von Haeseler A.

J Comput Biol. 2015 Dec;22(12):1129-42. doi: 10.1089/cmb.2015.0146. Epub 2015 Oct 8.

8.

Split diversity in constrained conservation prioritization using integer linear programming.

Chernomor O, Minh BQ, Forest F, Klaere S, Ingram T, Henzinger M, von Haeseler A.

Methods Ecol Evol. 2015 Jan;6(1):83-91. Epub 2014 Dec 6.

9.

Decreased expression of endogenous feline leukemia virus in cat lymphomas: a case control study.

Krunic M, Ertl R, Hagen B, Sedlazeck FJ, Hofmann-Lehmann R, von Haeseler A, Klein D.

BMC Vet Res. 2015 Apr 10;11:90. doi: 10.1186/s12917-015-0378-9.

10.

Innate immune response to Streptococcus pyogenes depends on the combined activation of TLR13 and TLR2.

Fieber C, Janos M, Koestler T, Gratz N, Li XD, Castiglia V, Aberle M, Sauert M, Wegner M, Alexopoulou L, Kirschning CJ, Chen ZJ, von Haeseler A, Kovarik P.

PLoS One. 2015 Mar 10;10(3):e0119727. doi: 10.1371/journal.pone.0119727. eCollection 2015.

11.

The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima.

Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, Blankenburg KP, Brites D, Capella-Gutiérrez S, Coyle M, Dearden PK, Du Pasquier L, Duncan EJ, Ebert D, Eibner C, Erikson G, Evans PD, Extavour CG, Francisco L, Gabaldón T, Gillis WJ, Goodwin-Horn EA, Green JE, Griffiths-Jones S, Grimmelikhuijzen CJ, Gubbala S, Guigó R, Han Y, Hauser F, Havlak P, Hayden L, Helbing S, Holder M, Hui JH, Hunn JP, Hunnekuhl VS, Jackson L, Javaid M, Jhangiani SN, Jiggins FM, Jones TE, Kaiser TS, Kalra D, Kenny NJ, Korchina V, Kovar CL, Kraus FB, Lapraz F, Lee SL, Lv J, Mandapat C, Manning G, Mariotti M, Mata R, Mathew T, Neumann T, Newsham I, Ngo DN, Ninova M, Okwuonu G, Ongeri F, Palmer WJ, Patil S, Patraquim P, Pham C, Pu LL, Putman NH, Rabouille C, Ramos OM, Rhodes AC, Robertson HE, Robertson HM, Ronshaugen M, Rozas J, Saada N, Sánchez-Gracia A, Scherer SE, Schurko AM, Siggens KW, Simmons D, Stief A, Stolle E, Telford MJ, Tessmar-Raible K, Thornton R, van der Zee M, von Haeseler A, Williams JM, Willis JH, Wu Y, Zou X, Lawson D, Muzny DM, Worley KC, Gibbs RA, Akam M, Richards S.

PLoS Biol. 2014 Nov 25;12(11):e1002005. doi: 10.1371/journal.pbio.1002005. eCollection 2014 Nov.

12.

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ.

Mol Biol Evol. 2015 Jan;32(1):268-74. doi: 10.1093/molbev/msu300. Epub 2014 Nov 3.

13.

The phylogenetic likelihood library.

Flouri T, Izquierdo-Carrasco F, Darriba D, Aberer AJ, Nguyen LT, Minh BQ, Von Haeseler A, Stamatakis A.

Syst Biol. 2015 Mar;64(2):356-62. doi: 10.1093/sysbio/syu084. Epub 2014 Oct 30.

14.

ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain.

Vesely C, Tauber S, Sedlazeck FJ, Tajaddod M, von Haeseler A, Jantsch MF.

Nucleic Acids Res. 2014 Oct 29;42(19):12155-68. doi: 10.1093/nar/gku844. Epub 2014 Sep 26.

15.

A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversity.

Sengoelge G, Winnicki W, Kupczok A, von Haeseler A, Schuster M, Pfaller W, Jennings P, Weltermann A, Blake S, Sunder-Plassmann G.

BMC Genomics. 2014 Aug 27;15:725. doi: 10.1186/1471-2164-15-725.

16.

Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria.

Kaschner M, Loeschcke A, Krause J, Minh BQ, Heck A, Endres S, Svensson V, Wirtz A, von Haeseler A, Jaeger KE, Drepper T, Krauss U.

Mol Microbiol. 2014 Sep;93(5):1066-78. doi: 10.1111/mmi.12719. Epub 2014 Aug 5.

17.

SNP2GO: functional analysis of genome-wide association studies.

Szkiba D, Kapun M, von Haeseler A, Gallach M.

Genetics. 2014 May;197(1):285-9. doi: 10.1534/genetics.113.160341. Epub 2014 Feb 21.

18.

The evolution of the ribosome biogenesis pathway from a yeast perspective.

Ebersberger I, Simm S, Leisegang MS, Schmitzberger P, Mirus O, von Haeseler A, Bohnsack MT, Schleiff E.

Nucleic Acids Res. 2014 Feb;42(3):1509-23. doi: 10.1093/nar/gkt1137. Epub 2013 Nov 14.

19.

Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects.

Dell'Ampio E, Meusemann K, Szucsich NU, Peters RS, Meyer B, Borner J, Petersen M, Aberer AJ, Stamatakis A, Walzl MG, Minh BQ, von Haeseler A, Ebersberger I, Pass G, Misof B.

Mol Biol Evol. 2014 Jan;31(1):239-49. doi: 10.1093/molbev/mst196. Epub 2013 Oct 18.

20.

NextGenMap: fast and accurate read mapping in highly polymorphic genomes.

Sedlazeck FJ, Rescheneder P, von Haeseler A.

Bioinformatics. 2013 Nov 1;29(21):2790-1. doi: 10.1093/bioinformatics/btt468. Epub 2013 Aug 23.

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