Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 64

1.

Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways.

Gruber AJ, Grandy WA, Balwierz PJ, Dimitrova YA, Pachkov M, Ciaudo C, van Nimwegen E, Zavolan M.

Nucleic Acids Res. 2014 Jul 16. pii: gku544. [Epub ahead of print]

PMID:
25030899
[PubMed - as supplied by publisher]
Free Article
2.

Transcriptional Network Analysis in Muscle Reveals AP-1 as a Partner of PGC-1α in the Regulation of the Hypoxic Gene Program.

Baresic M, Salatino S, Kupr B, van Nimwegen E, Handschin C.

Mol Cell Biol. 2014 Aug 15;34(16):2996-3012. doi: 10.1128/MCB.01710-13. Epub 2014 Jun 9.

PMID:
24912679
[PubMed - in process]
3.

Automated reconstruction of whole-genome phylogenies from short-sequence reads.

Bertels F, Silander OK, Pachkov M, Rainey PB, van Nimwegen E.

Mol Biol Evol. 2014 May;31(5):1077-88. doi: 10.1093/molbev/msu088. Epub 2014 Mar 5.

PMID:
24600054
[PubMed - in process]
Free PMC Article
4.

Pegylated IFN-α regulates hepatic gene expression through transient Jak/STAT activation.

Dill MT, Makowska Z, Trincucci G, Gruber AJ, Vogt JE, Filipowicz M, Calabrese D, Krol I, Lau DT, Terracciano L, van Nimwegen E, Roth V, Heim MH.

J Clin Invest. 2014 Apr 1;124(4):1568-81. doi: 10.1172/JCI70408. Epub 2014 Feb 24.

PMID:
24569457
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Tead2 expression levels control the subcellular distribution of Yap and Taz, zyxin expression and epithelial-mesenchymal transition.

Diepenbruck M, Waldmeier L, Ivanek R, Berninger P, Arnold P, van Nimwegen E, Christofori G.

J Cell Sci. 2014 Apr 1;127(Pt 7):1523-36. doi: 10.1242/jcs.139865. Epub 2014 Feb 19.

PMID:
24554433
[PubMed - in process]
Free Article
6.

ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs.

Balwierz PJ, Pachkov M, Arnold P, Gruber AJ, Zavolan M, van Nimwegen E.

Genome Res. 2014 May;24(5):869-84. doi: 10.1101/gr.169508.113. Epub 2014 Feb 10.

PMID:
24515121
[PubMed - in process]
Free PMC Article
7.

Computational modeling identifies key gene regulatory interactions underlying phenobarbital-mediated tumor promotion.

Luisier R, Unterberger EB, Goodman JI, Schwarz M, Moggs J, Terranova R, van Nimwegen E.

Nucleic Acids Res. 2014 Apr;42(7):4180-95. doi: 10.1093/nar/gkt1415. Epub 2014 Jan 23.

PMID:
24464994
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

An epigenetic profile of early T-cell development from multipotent progenitors to committed T-cell descendants.

Vigano MA, Ivanek R, Balwierz P, Berninger P, van Nimwegen E, Karjalainen K, Rolink A.

Eur J Immunol. 2014 Apr;44(4):1181-93. doi: 10.1002/eji.201344022. Epub 2014 Feb 1.

PMID:
24374622
[PubMed - indexed for MEDLINE]
9.

Timescales and bottlenecks in miRNA-dependent gene regulation.

Hausser J, Syed AP, Selevsek N, van Nimwegen E, Jaskiewicz L, Aebersold R, Zavolan M.

Mol Syst Biol. 2013 Dec 3;9:711. doi: 10.1038/msb.2013.68.

PMID:
24301800
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Correction: Klf4 Is a Transcriptional Regulator of Genes Critical for EMT, Including Jnk1 (Mapk8).

Tiwari N, Meyer-Schaller N, Arnold P, Antoniadis H, Pachkov M, van Nimwegen E, Christofori G.

PLoS One. 2013 Oct 25;8(10). doi: 10.1371/annotation/121b04a1-0cbb-4e24-8a63-fc9cdd31ec76. eCollection 2013.

PMID:
24204500
[PubMed - as supplied by publisher]
Free PMC Article
11.

Nucleosome free regions in yeast promoters result from competitive binding of transcription factors that interact with chromatin modifiers.

Ozonov EA, van Nimwegen E.

PLoS Comput Biol. 2013;9(8):e1003181. doi: 10.1371/journal.pcbi.1003181. Epub 2013 Aug 22.

PMID:
23990766
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming.

Tiwari N, Tiwari VK, Waldmeier L, Balwierz PJ, Arnold P, Pachkov M, Meyer-Schaller N, Schübeler D, van Nimwegen E, Christofori G.

Cancer Cell. 2013 Jun 10;23(6):768-83. doi: 10.1016/j.ccr.2013.04.020.

PMID:
23764001
[PubMed - indexed for MEDLINE]
Free Article
13.

Parity induces differentiation and reduces Wnt/Notch signaling ratio and proliferation potential of basal stem/progenitor cells isolated from mouse mammary epithelium.

Meier-Abt F, Milani E, Roloff T, Brinkhaus H, Duss S, Meyer DS, Klebba I, Balwierz PJ, van Nimwegen E, Bentires-Alj M.

Breast Cancer Res. 2013 Apr 29;15(2):R36. doi: 10.1186/bcr3419.

PMID:
23621987
[PubMed - in process]
Free PMC Article
14.

Klf4 is a transcriptional regulator of genes critical for EMT, including Jnk1 (Mapk8).

Tiwari N, Meyer-Schaller N, Arnold P, Antoniadis H, Pachkov M, van Nimwegen E, Christofori G.

PLoS One. 2013;8(2):e57329. doi: 10.1371/journal.pone.0057329. Epub 2013 Feb 25.

PMID:
23451207
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates of E. coli.

Hofsteenge N, van Nimwegen E, Silander OK.

BMC Microbiol. 2013 Feb 4;13:25. doi: 10.1186/1471-2180-13-25.

PMID:
23379956
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets.

Khorshid M, Hausser J, Zavolan M, van Nimwegen E.

Nat Methods. 2013 Mar;10(3):253-5. doi: 10.1038/nmeth.2341. Epub 2013 Jan 20.

PMID:
23334102
[PubMed - indexed for MEDLINE]
17.

SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates.

Pachkov M, Balwierz PJ, Arnold P, Ozonov E, van Nimwegen E.

Nucleic Acids Res. 2013 Jan;41(Database issue):D214-20. doi: 10.1093/nar/gks1145. Epub 2012 Nov 24.

PMID:
23180783
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The corepressor NCoR1 antagonizes PGC-1α and estrogen-related receptor α in the regulation of skeletal muscle function and oxidative metabolism.

Pérez-Schindler J, Summermatter S, Salatino S, Zorzato F, Beer M, Balwierz PJ, van Nimwegen E, Feige JN, Auwerx J, Handschin C.

Mol Cell Biol. 2012 Dec;32(24):4913-24. doi: 10.1128/MCB.00877-12. Epub 2012 Oct 1.

PMID:
23028049
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting.

Arnold P, Schöler A, Pachkov M, Balwierz PJ, Jørgensen H, Stadler MB, van Nimwegen E, Schübeler D.

Genome Res. 2013 Jan;23(1):60-73. doi: 10.1101/gr.142661.112. Epub 2012 Sep 10.

PMID:
22964890
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels.

Tippmann SC, Ivanek R, Gaidatzis D, Schöler A, Hoerner L, van Nimwegen E, Stadler PF, Stadler MB, Schübeler D.

Mol Syst Biol. 2012 Jul 17;8:593. doi: 10.1038/msb.2012.23.

PMID:
22806141
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk