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Results: 1 to 20 of 44

1.

A novel feature-based approach to extract drug-drug interactions from biomedical text.

Bui QC, Sloot PM, van Mulligen EM, Kors JA.

Bioinformatics. 2014 Aug 20. pii: btu557. [Epub ahead of print]

PMID:
25143286
[PubMed - as supplied by publisher]
2.

Knowledge-based extraction of adverse drug events from biomedical text.

Kang N, Singh B, Bui C, Afzal Z, van Mulligen EM, Kors JA.

BMC Bioinformatics. 2014 Mar 4;15:64. doi: 10.1186/1471-2105-15-64.

PMID:
24593054
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The EU-ADR Web Platform: delivering advanced pharmacovigilance tools.

Oliveira JL, Lopes P, Nunes T, Campos D, Boyer S, Ahlberg E, van Mulligen EM, Kors JA, Singh B, Furlong LI, Sanz F, Bauer-Mehren A, Carrascosa MC, Mestres J, Avillach P, Diallo G, Díaz Acedo C, van der Lei J.

Pharmacoepidemiol Drug Saf. 2013 May;22(5):459-67. doi: 10.1002/pds.3375. Epub 2012 Dec 4.

PMID:
23208789
[PubMed - indexed for MEDLINE]
4.

Using rule-based natural language processing to improve disease normalization in biomedical text.

Kang N, Singh B, Afzal Z, van Mulligen EM, Kors JA.

J Am Med Inform Assoc. 2013 Sep-Oct;20(5):876-81. doi: 10.1136/amiajnl-2012-001173. Epub 2012 Oct 6.

PMID:
23043124
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The EU-ADR corpus: annotated drugs, diseases, targets, and their relationships.

van Mulligen EM, Fourrier-Reglat A, Gurwitz D, Molokhia M, Nieto A, Trifiro G, Kors JA, Furlong LI.

J Biomed Inform. 2012 Oct;45(5):879-84. doi: 10.1016/j.jbi.2012.04.004. Epub 2012 Apr 25.

PMID:
22554700
[PubMed - indexed for MEDLINE]
Free Article
6.

Training text chunkers on a silver standard corpus: can silver replace gold?

Kang N, van Mulligen EM, Kors JA.

BMC Bioinformatics. 2012 Jan 30;13:17. doi: 10.1186/1471-2105-13-17.

PMID:
22289351
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Using an ensemble system to improve concept extraction from clinical records.

Kang N, Afzal Z, Singh B, van Mulligen EM, Kors JA.

J Biomed Inform. 2012 Jun;45(3):423-8. doi: 10.1016/j.jbi.2011.12.009. Epub 2012 Jan 3.

PMID:
22239956
[PubMed - indexed for MEDLINE]
Free Article
8.

Comparing and combining chunkers of biomedical text.

Kang N, van Mulligen EM, Kors JA.

J Biomed Inform. 2011 Apr;44(2):354-60. doi: 10.1016/j.jbi.2010.10.005. Epub 2010 Nov 4.

PMID:
21056118
[PubMed - indexed for MEDLINE]
Free Article
9.

Rewriting and suppressing UMLS terms for improved biomedical term identification.

Hettne KM, van Mulligen EM, Schuemie MJ, Schijvenaars BJ, Kors JA.

J Biomed Semantics. 2010 Mar 31;1(1):5. doi: 10.1186/2041-1480-1-5.

PMID:
20618981
[PubMed]
Free PMC Article
10.

Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining.

Hettne KM, Williams AJ, van Mulligen EM, Kleinjans J, Tkachenko V, Kors JA.

J Cheminform. 2010 Jun 3;2(1):4. doi: 10.1186/1758-2946-2-4. No abstract available.

PMID:
20525267
[PubMed]
Free PMC Article
11.

Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining.

Hettne KM, Williams AJ, van Mulligen EM, Kleinjans J, Tkachenko V, Kors JA.

J Cheminform. 2010 Mar 23;2(1):3. doi: 10.1186/1758-2946-2-3.

PMID:
20331846
[PubMed]
Free PMC Article
12.

CALBC silver standard corpus.

Rebholz-Schuhmann D, Jimeno Yepes AJ, Van Mulligen EM, Kang N, Kors J, Milward D, Corbett P, Buyko E, Beisswanger E, Hahn U.

J Bioinform Comput Biol. 2010 Feb;8(1):163-79.

PMID:
20183881
[PubMed - indexed for MEDLINE]
13.

Novel protein-protein interactions inferred from literature context.

van Haagen HH, 't Hoen PA, Botelho Bovo A, de Morrée A, van Mulligen EM, Chichester C, Kors JA, den Dunnen JT, van Ommen GJ, van der Maarel SM, Kern VM, Mons B, Schuemie MJ.

PLoS One. 2009 Nov 18;4(11):e7894. doi: 10.1371/journal.pone.0007894.

PMID:
19924298
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Alignment of the UMLS semantic network with BioTop: methodology and assessment.

Schulz S, Beisswanger E, van den Hoek L, Bodenreider O, van Mulligen EM.

Bioinformatics. 2009 Jun 15;25(12):i69-76. doi: 10.1093/bioinformatics/btp194.

PMID:
19478019
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Education and research in INFOBIOMED, the European Network of Excellence in Biomedical Informatics.

de la Calle G, van Mulligen EM, Molero E, Perez-Rey D, Martín L, Crespo J, Maojo V.

AMIA Annu Symp Proc. 2007 Oct 11:927.

PMID:
18694027
[PubMed - indexed for MEDLINE]
16.

Training multidisciplinary biomedical informatics students: three years of experience.

van Mulligen EM, Cases M, Hettne K, Molero E, Weeber M, Robertson KA, Oliva B, de la Calle G, Maojo V.

J Am Med Inform Assoc. 2008 Mar-Apr;15(2):246-54. Epub 2007 Dec 20.

PMID:
18096914
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Literature-based concept profiles for gene annotation: the issue of weighting.

Jelier R, Schuemie MJ, Roes PJ, van Mulligen EM, Kors JA.

Int J Med Inform. 2008 May;77(5):354-62. Epub 2007 Sep 10.

PMID:
17827057
[PubMed - indexed for MEDLINE]
18.

Applied information retrieval and multidisciplinary research: new mechanistic hypotheses in complex regional pain syndrome.

Hettne KM, de Mos M, de Bruijn AG, Weeber M, Boyer S, van Mulligen EM, Cases M, Mestres J, van der Lei J.

J Biomed Discov Collab. 2007 May 4;2:2.

PMID:
17480215
[PubMed]
Free PMC Article
19.

Databases for knowledge discovery. Examples from biomedicine and health care.

van Bemmel JH, van Mulligen EM, Mons B, van Wijk M, Kors JA, van der Lei J.

Int J Med Inform. 2006 Mar-Apr;75(3-4):257-67. Epub 2005 Sep 29.

PMID:
16198618
[PubMed - indexed for MEDLINE]
20.

Thesaurus-based disambiguation of gene symbols.

Schijvenaars BJ, Mons B, Weeber M, Schuemie MJ, van Mulligen EM, Wain HM, Kors JA.

BMC Bioinformatics. 2005 Jun 16;6:149.

PMID:
15958172
[PubMed - indexed for MEDLINE]
Free PMC Article

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