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Items: 1 to 20 of 43

1.

Genetic and environmental influences interact with age and sex in shaping the human methylome.

van Dongen J, Nivard MG, Willemsen G, Hottenga JJ, Helmer Q, Dolan CV, Ehli EA, Davies GE, van Iterson M, Breeze CE, Beck S; BIOS Consortium, Suchiman HE, Jansen R, van Meurs JB, Heijmans BT, Slagboom PE, Boomsma DI.

Nat Commun. 2016 Apr 7;7:11115. doi: 10.1038/ncomms11115.

2.

Refined mapping of autoimmune disease associated genetic variants with gene expression suggests an important role for non-coding RNAs.

Ricaño-Ponce I, Zhernakova DV, Deelen P, Luo O, Li X, Isaacs A, Karjalainen J, Di Tommaso J, Borek ZA, Zorro MM, Gutierrez-Achury J, Uitterlinden AG, Hofman A, van Meurs J; BIOS consortium; Lifelines Cohort Study, Netea MG, Jonkers IH, Withoff S, van Duijn CM, Li Y, Ruan Y, Franke L, Wijmenga C, Kumar V.

J Autoimmun. 2016 Apr;68:62-74. doi: 10.1016/j.jaut.2016.01.002. Epub 2016 Feb 18.

3.

Sidestream dark field imaging of the serosal microcirculation during gastrointestinal surgery.

de Bruin AF, Kornmann VN, van der Sloot K, van Vugt JL, Gosselink MP, Smits A, Van Ramshorst B, Boerma EC, Noordzij PG, Boerma D, van Iterson M.

Colorectal Dis. 2016 Mar;18(3):O103-10. doi: 10.1111/codi.13250.

PMID:
26725570
4.

Improving Phenotypic Prediction by Combining Genetic and Epigenetic Associations.

Shah S, Bonder MJ, Marioni RE, Zhu Z, McRae AF, Zhernakova A, Harris SE, Liewald D, Henders AK, Mendelson MM, Liu C, Joehanes R, Liang L; BIOS Consortium, Levy D, Martin NG, Starr JM, Wijmenga C, Wray NR, Yang J, Montgomery GW, Franke L, Deary IJ, Visscher PM.

Am J Hum Genet. 2015 Jul 2;97(1):75-85. doi: 10.1016/j.ajhg.2015.05.014. Epub 2015 Jun 25.

5.

Human genomics. Effect of predicted protein-truncating genetic variants on the human transcriptome.

Rivas MA, Pirinen M, Conrad DF, Lek M, Tsang EK, Karczewski KJ, Maller JB, Kukurba KR, DeLuca DS, Fromer M, Ferreira PG, Smith KS, Zhang R, Zhao F, Banks E, Poplin R, Ruderfer DM, Purcell SM, Tukiainen T, Minikel EV, Stenson PD, Cooper DN, Huang KH, Sullivan TJ, Nedzel J; GTEx Consortium; Geuvadis Consortium, Bustamante CD, Li JB, Daly MJ, Guigo R, Donnelly P, Ardlie K, Sammeth M, Dermitzakis ET, McCarthy MI, Montgomery SB, Lappalainen T, MacArthur DG.

Science. 2015 May 8;348(6235):666-9. doi: 10.1126/science.1261877.

PMID:
25954003
6.

MethylAid: visual and interactive quality control of large Illumina 450k datasets.

van Iterson M, Tobi EW, Slieker RC, den Hollander W, Luijk R, Slagboom PE, Heijmans BT.

Bioinformatics. 2014 Dec 1;30(23):3435-7. doi: 10.1093/bioinformatics/btu566. Epub 2014 Aug 21.

7.

Tandem RNA chimeras contribute to transcriptome diversity in human population and are associated with intronic genetic variants.

Greger L, Su J, Rung J, Ferreira PG; Geuvadis consortium, Lappalainen T, Dermitzakis ET, Brazma A.

PLoS One. 2014 Aug 18;9(8):e104567. doi: 10.1371/journal.pone.0104567. eCollection 2014.

8.

International study on microcirculatory shock occurrence in acutely ill patients.

Vellinga NA, Boerma EC, Koopmans M, Donati A, Dubin A, Shapiro NI, Pearse RM, Machado FR, Fries M, Akarsu-Ayazoglu T, Pranskunas A, Hollenberg S, Balestra G, van Iterson M, van der Voort PH, Sadaka F, Minto G, Aypar U, Hurtado FJ, Martinelli G, Payen D, van Haren F, Holley A, Pattnaik R, Gomez H, Mehta RL, Rodriguez AH, Ruiz C, Canales HS, Duranteau J, Spronk PE, Jhanji S, Hubble S, Chierego M, Jung C, Martin D, Sorbara C, Tijssen JG, Bakker J, Ince C; microSOAP Study Group.

Crit Care Med. 2015 Jan;43(1):48-56. doi: 10.1097/CCM.0000000000000553.

PMID:
25126880
9.

Is microvessel density correlated with anastomotic leakage after low anterior resection?

Schouten SB, De Bruin AF, Gosselink MP, Nigg AL, van Iterson M, Biermann K, Kliffen M, van der Harst E.

Hepatogastroenterology. 2014 Jan-Feb;61(129):90-3.

PMID:
24895800
10.

Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes.

van Heesch S, van Iterson M, Jacobi J, Boymans S, Essers PB, de Bruijn E, Hao W, MacInnes AW, Cuppen E, Simonis M.

Genome Biol. 2014 Jan 7;15(1):R6. doi: 10.1186/gb-2014-15-1-r6.

11.

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories.

't Hoen PA, Friedländer MR, Almlöf J, Sammeth M, Pulyakhina I, Anvar SY, Laros JF, Buermans HP, Karlberg O, Brännvall M; GEUVADIS Consortium, den Dunnen JT, van Ommen GJ, Gut IG, Guigó R, Estivill X, Syvänen AC, Dermitzakis ET, Lappalainen T.

Nat Biotechnol. 2013 Nov;31(11):1015-22. doi: 10.1038/nbt.2702. Epub 2013 Sep 15.

PMID:
24037425
12.

Transcriptome and genome sequencing uncovers functional variation in humans.

Lappalainen T, Sammeth M, Friedländer MR, 't Hoen PA, Monlong J, Rivas MA, Gonzàlez-Porta M, Kurbatova N, Griebel T, Ferreira PG, Barann M, Wieland T, Greger L, van Iterson M, Almlöf J, Ribeca P, Pulyakhina I, Esser D, Giger T, Tikhonov A, Sultan M, Bertier G, MacArthur DG, Lek M, Lizano E, Buermans HP, Padioleau I, Schwarzmayr T, Karlberg O, Ongen H, Kilpinen H, Beltran S, Gut M, Kahlem K, Amstislavskiy V, Stegle O, Pirinen M, Montgomery SB, Donnelly P, McCarthy MI, Flicek P, Strom TM; Geuvadis Consortium, Lehrach H, Schreiber S, Sudbrak R, Carracedo A, Antonarakis SE, Häsler R, Syvänen AC, van Ommen GJ, Brazma A, Meitinger T, Rosenstiel P, Guigó R, Gut IG, Estivill X, Dermitzakis ET.

Nature. 2013 Sep 26;501(7468):506-11. doi: 10.1038/nature12531. Epub 2013 Sep 15.

13.

General power and sample size calculations for high-dimensional genomic data.

van Iterson M, van de Wiel MA, Boer JM, de Menezes RX.

Stat Appl Genet Mol Biol. 2013 Aug;12(4):449-67. doi: 10.1515/sagmb-2012-0046.

PMID:
23934609
14.

Effects of decontamination of the digestive tract and oropharynx in intensive care unit patients on 1-year survival.

Oostdijk EA, de Smet AM, Bonten MJ; Dutch SOD-SDD trialists group.

Am J Respir Crit Care Med. 2013 Jul 1;188(1):117-20. doi: 10.1164/rccm.201209-1733LE. No abstract available.

PMID:
23815730
15.

Integrated analysis of microRNA and mRNA expression: adding biological significance to microRNA target predictions.

van Iterson M, Bervoets S, de Meijer EJ, Buermans HP, 't Hoen PA, Menezes RX, Boer JM.

Nucleic Acids Res. 2013 Aug;41(15):e146. doi: 10.1093/nar/gkt525. Epub 2013 Jun 14.

16.

Selective decontamination of the digestive tract and selective oropharyngeal decontamination in intensive care unit patients: a cost-effectiveness analysis.

Oostdijk EA, de Wit GA, Bakker M, de Smet AM, Bonten MJ; Dutch SOD-SDD trialists group.

BMJ Open. 2013 Mar 5;3(3). pii: e002529. doi: 10.1136/bmjopen-2012-002529.

17.

A novel and fast normalization method for high-density arrays.

van Iterson M, Duijkers FA, Meijerink JP, Admiraal P, van Ommen GJ, Boer JM, van Noesel MM, Menezes RX.

Stat Appl Genet Mol Biol. 2012 Jul 12;11(4). pii: /j/sagmb.2012.11.issue-4/1544-6115.1753/1544-6115.1753.xml. doi: 10.1515/1544-6115.1753.

PMID:
22850064
18.

Electrical cardioversion for atrial fibrillation improves microvascular flow independent of blood pressure changes.

Elbers PW, Prins WB, Plokker HW, van Dongen EP, van Iterson M, Ince C.

J Cardiothorac Vasc Anesth. 2012 Oct;26(5):799-803. doi: 10.1053/j.jvca.2012.04.016. Epub 2012 Jun 9.

PMID:
22683158
19.

Decontamination of cephalosporin-resistant Enterobacteriaceae during selective digestive tract decontamination in intensive care units.

Oostdijk EA, de Smet AM, Kesecioglu J, Bonten MJ; Dutch SOD-SDD Trialists Group.

J Antimicrob Chemother. 2012 Sep;67(9):2250-3. Epub 2012 May 29.

20.

The effects of low levels of dystrophin on mouse muscle function and pathology.

van Putten M, Hulsker M, Nadarajah VD, van Heiningen SH, van Huizen E, van Iterson M, Admiraal P, Messemaker T, den Dunnen JT, 't Hoen PA, Aartsma-Rus A.

PLoS One. 2012;7(2):e31937. doi: 10.1371/journal.pone.0031937. Epub 2012 Feb 16.

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