PubMed

Unlocking the secrets of the genome.

Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, Karpen GH, Kellis M, Lai EC, Lieb JD, MacAlpine DM, Micklem G, Piano F, Snyder M, Stein L, White KP, Waterston RH; modENCODE Consortium.

Nature. 2009 Jun 18;459(7249):927-30. No abstract available. PMID: 19536255 [PubMed - indexed for MEDLINE]Related articles

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.

Simonis N, Rual JF, Carvunis AR, Tasan M, Lemmens I, Hirozane-Kishikawa T, Hao T, Sahalie JM, Venkatesan K, Gebreab F, Cevik S, Klitgord N, Fan C, Braun P, Li N, Ayivi-Guedehoussou N, Dann E, Bertin N, Szeto D, Dricot A, Yildirim MA, Lin C, de Smet AS, Kao HL, Simon C, Smolyar A, Ahn JS, Tewari M, Boxem M, Milstein S, Yu H, Dreze M, Vandenhaute J, Gunsalus KC, Cusick ME, Hill DE, Tavernier J, Roth FP, Vidal M.

Nat Methods. 2009 Jan;6(1):47-54.PMID: 19123269 [PubMed - indexed for MEDLINE]Related articles

Browsing multidimensional molecular networks with the generic network browser (N-Browse).

Kao HL, Gunsalus KC.

Curr Protoc Bioinformatics. 2008 Sep;Chapter 9:Unit 9.11.PMID: 18819079 [PubMed - indexed for MEDLINE]Related articles

Mating induces an immune response and developmental switch in the Drosophila oviduct.

Kapelnikov A, Zelinger E, Gottlieb Y, Rhrissorrakrai K, Gunsalus KC, Heifetz Y.

Proc Natl Acad Sci U S A. 2008 Sep 16;105(37):13912-7. Epub 2008 Aug 25.PMID: 18725632 [PubMed - indexed for MEDLINE]Related articlesFree article

A protein domain-based interactome network for C. elegans early embryogenesis.

Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, de Lichtervelde L, Mul JD, van de Peut D, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, de Smet AS, Wang H, Schlaitz AL, Hao T, Milstein S, Fan C, Tipsword M, Drew K, Galli M, Rhrissorrakrai K, Drechsel D, Koller D, Roth FP, Iakoucheva LM, Dunker AK, Bonneau R, Gunsalus KC, Hill DE, Piano F, Tavernier J, van den Heuvel S, Hyman AA, Vidal M.

Cell. 2008 Aug 8;134(3):534-45.PMID: 18692475 [PubMed - indexed for MEDLINE]Related articlesFree article

A Caenorhabditis elegans genetic-interaction map wiggles into view.

Gunsalus KC.

J Biol. 2008;7(3):8. Epub 2008 Mar 7. Review.PMID: 18341704 [PubMed - indexed for MEDLINE]Related articlesFree article

Protein production and purification.

Structural Genomics Consortium; China Structural Genomics Consortium; Northeast Structural Genomics Consortium, Gräslund S, Nordlund P, Weigelt J, Hallberg BM, Bray J, Gileadi O, Knapp S, Oppermann U, Arrowsmith C, Hui R, Ming J, dhe-Paganon S, Park HW, Savchenko A, Yee A, Edwards A, Vincentelli R, Cambillau C, Kim R, Kim SH, Rao Z, Shi Y, Terwilliger TC, Kim CY, Hung LW, Waldo GS, Peleg Y, Albeck S, Unger T, Dym O, Prilusky J, Sussman JL, Stevens RC, Lesley SA, Wilson IA, Joachimiak A, Collart F, Dementieva I, Donnelly MI, Eschenfeldt WH, Kim Y, Stols L, Wu R, Zhou M, Burley SK, Emtage JS, Sauder JM, Thompson D, Bain K, Luz J, Gheyi T, Zhang F, Atwell S, Almo SC, Bonanno JB, Fiser A, Swaminathan S, Studier FW, Chance MR, Sali A, Acton TB, Xiao R, Zhao L, Ma LC, Hunt JF, Tong L, Cunningham K, Inouye M, Anderson S, Janjua H, Shastry R, Ho CK, Wang D, Wang H, Jiang M, Montelione GT, Stuart DI, Owens RJ, Daenke S, Schütz A, Heinemann U, Yokoyama S, Büssow K, Gunsalus KC.

Nat Methods. 2008 Feb;5(2):135-46. Review. Erratum in: Nat Methods. 2008 Apr;5(4):369. Hallberg, B Martin [added]. PMID: 18235434 [PubMed - indexed for MEDLINE]Related articles

Diverse roles of actin in C. elegans early embryogenesis.

Velarde N, Gunsalus KC, Piano F.

BMC Dev Biol. 2007 Dec 24;7:142.PMID: 18157918 [PubMed - indexed for MEDLINE]Related articlesFree article

C. elegans network biology: a beginning.

Piano F, Gunsalus KC, Hill DE, Vidal M.

WormBook. 2006 Aug 21:1-20. Review.PMID: 18050437 [PubMed - indexed for MEDLINE]Related articlesFree article

UTRome.org: a platform for 3'UTR biology in C. elegans.

Mangone M, Macmenamin P, Zegar C, Piano F, Gunsalus KC.

Nucleic Acids Res. 2008 Jan;36(Database issue):D57-62. Epub 2007 Nov 5.PMID: 17986455 [PubMed - indexed for MEDLINE]Related articlesFree article

Network modeling links breast cancer susceptibility and centrosome dysfunction.

Pujana MA, Han JD, Starita LM, Stevens KN, Tewari M, Ahn JS, Rennert G, Moreno V, Kirchhoff T, Gold B, Assmann V, Elshamy WM, Rual JF, Levine D, Rozek LS, Gelman RS, Gunsalus KC, Greenberg RA, Sobhian B, Bertin N, Venkatesan K, Ayivi-Guedehoussou N, Solé X, Hernández P, Lázaro C, Nathanson KL, Weber BL, Cusick ME, Hill DE, Offit K, Livingston DM, Gruber SB, Parvin JD, Vidal M.

Nat Genet. 2007 Nov;39(11):1338-49. Epub 2007 Oct 7.PMID: 17922014 [PubMed - indexed for MEDLINE]Related articles

Forward chemical genetic approach identifies new role for GAPDH in insulin signaling.

Min J, Kyung Kim Y, Cipriani PG, Kang M, Khersonsky SM, Walsh DP, Lee JY, Niessen S, Yates JR 3rd, Gunsalus K, Piano F, Chang YT.

Nat Chem Biol. 2007 Jan;3(1):55-9. Epub 2006 Nov 19.PMID: 17115034 [PubMed - indexed for MEDLINE]Related articles

Twinstar, the Drosophila homolog of cofilin/ADF, is required for planar cell polarity patterning.

Blair A, Tomlinson A, Pham H, Gunsalus KC, Goldberg ML, Laski FA.

Development. 2006 May;133(9):1789-97. Epub 2006 Mar 29.PMID: 16571634 [PubMed - indexed for MEDLINE]Related articlesFree article

A genome-wide map of conserved microRNA targets in C. elegans.

Lall S, Grün D, Krek A, Chen K, Wang YL, Dewey CN, Sood P, Colombo T, Bray N, Macmenamin P, Kao HL, Gunsalus KC, Pachter L, Piano F, Rajewsky N.

Curr Biol. 2006 Mar 7;16(5):460-71. Epub 2006 Feb 2.PMID: 16458514 [PubMed - indexed for MEDLINE]Related articles

microRNA target predictions across seven Drosophila species and comparison to mammalian targets.

Grün D, Wang YL, Langenberger D, Gunsalus KC, Rajewsky N.

PLoS Comput Biol. 2005 Jun;1(1):e13. Epub 2005 Jun 24.PMID: 16103902 [PubMed]Related articlesFree article

Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis.

Gunsalus KC, Ge H, Schetter AJ, Goldberg DS, Han JD, Hao T, Berriz GF, Bertin N, Huang J, Chuang LS, Li N, Mani R, Hyman AA, Sönnichsen B, Echeverri CJ, Roth FP, Vidal M, Piano F.

Nature. 2005 Aug 11;436(7052):861-5.PMID: 16094371 [PubMed - indexed for MEDLINE]Related articles

Robotic cloning and Protein Production Platform of the Northeast Structural Genomics Consortium.

Acton TB, Gunsalus KC, Xiao R, Ma LC, Aramini J, Baran MC, Chiang YW, Climent T, Cooper B, Denissova NG, Douglas SM, Everett JK, Ho CK, Macapagal D, Rajan PK, Shastry R, Shih LY, Swapna GV, Wilson M, Wu M, Gerstein M, Inouye M, Hunt JF, Montelione GT.

Methods Enzymol. 2005;394:210-43.PMID: 15808222 [PubMed - indexed for MEDLINE]Related articles

Combinatorial microRNA target predictions.

Krek A, Grün D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, MacMenamin P, da Piedade I, Gunsalus KC, Stoffel M, Rajewsky N.

Nat Genet. 2005 May;37(5):495-500. Epub 2005 Apr 3.PMID: 15806104 [PubMed - indexed for MEDLINE]Related articles

Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans.

Sönnichsen B, Koski LB, Walsh A, Marschall P, Neumann B, Brehm M, Alleaume AM, Artelt J, Bettencourt P, Cassin E, Hewitson M, Holz C, Khan M, Lazik S, Martin C, Nitzsche B, Ruer M, Stamford J, Winzi M, Heinkel R, Röder M, Finell J, Häntsch H, Jones SJ, Jones M, Piano F, Gunsalus KC, Oegema K, Gönczy P, Coulson A, Hyman AA, Echeverri CJ.

Nature. 2005 Mar 24;434(7032):462-9.PMID: 15791247 [PubMed - indexed for MEDLINE]Related articles

New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones.

Fernandez AG, Gunsalus KC, Huang J, Chuang LS, Ying N, Liang HL, Tang C, Schetter AJ, Zegar C, Rual JF, Hill DE, Reinke V, Vidal M, Piano F.

Genome Res. 2005 Feb;15(2):250-9.PMID: 15687288 [PubMed - indexed for MEDLINE]Related articlesFree article