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The Footprint of Polygenic Adaptation on Stress-Responsive Cis-Regulatory Divergence in the Arabidopsis Genus.

He F, Arce AL, Schmitz G, Koornneef M, Novikova P, Beyer A, de Meaux J.

Mol Biol Evol. 2016 Aug;33(8):2088-101. doi: 10.1093/molbev/msw096. Epub 2016 May 11.


miR824-Regulated AGAMOUS-LIKE16 Contributes to Flowering Time Repression in Arabidopsis.

Hu JY, Zhou Y, He F, Dong X, Liu LY, Coupland G, Turck F, de Meaux J.

Plant Cell. 2014 May 29;26(5):2024-2037. [Epub ahead of print]


Local evolution of seed flotation in Arabidopsis.

Saez-Aguayo S, Rondeau-Mouro C, Macquet A, Kronholm I, Ralet MC, Berger A, Sallé C, Poulain D, Granier F, Botran L, Loudet O, de Meaux J, Marion-Poll A, North HM.

PLoS Genet. 2014 Mar 13;10(3):e1004221. doi: 10.1371/journal.pgen.1004221. eCollection 2014 Mar.


The spectrum of mutations controlling complex traits and the genetics of fitness in plants.

Falke KC, Glander S, He F, Hu J, de Meaux J, Schmitz G.

Curr Opin Genet Dev. 2013 Dec;23(6):665-71. doi: 10.1016/j.gde.2013.10.006. Epub 2013 Nov 20. Review.


Can we always sweep the details of RNA-processing under the carpet?

Klironomos FD, de Meaux J, Berg J.

Phys Biol. 2013 Oct;10(5):056007. doi: 10.1088/1478-3975/10/5/056007. Epub 2013 Oct 3.


Co-variation between seed dormancy, growth rate and flowering time changes with latitude in Arabidopsis thaliana.

Debieu M, Tang C, Stich B, Sikosek T, Effgen S, Josephs E, Schmitt J, Nordborg M, Koornneef M, de Meaux J.

PLoS One. 2013 May 23;8(5):e61075. doi: 10.1371/journal.pone.0061075. Print 2013.


Genetic basis of adaptation in Arabidopsis thaliana: local adaptation at the seed dormancy QTL DOG1.

Kronholm I, Picó FX, Alonso-Blanco C, Goudet J, de Meaux J.

Evolution. 2012 Jul;66(7):2287-302. doi: 10.1111/j.1558-5646.2012.01590.x. Epub 2012 Feb 28.


Genome-wide analysis of cis-regulatory divergence between species in the Arabidopsis genus.

He F, Zhang X, Hu J, Turck F, Dong X, Goebel U, Borevitz J, de Meaux J.

Mol Biol Evol. 2012 Nov;29(11):3385-95. doi: 10.1093/molbev/mss146. Epub 2012 May 28.


Flagellin perception varies quantitatively in Arabidopsis thaliana and its relatives.

Vetter MM, Kronholm I, He F, Häweker H, Reymond M, Bergelson J, Robatzek S, de Meaux J.

Mol Biol Evol. 2012 Jun;29(6):1655-67. doi: 10.1093/molbev/mss011. Epub 2012 Jan 16.


Widespread interspecific divergence in cis-regulation of transposable elements in the Arabidopsis genus.

He F, Zhang X, Hu JY, Turck F, Dong X, Goebel U, Borevitz JO, de Meaux J.

Mol Biol Evol. 2012 Mar;29(3):1081-91. doi: 10.1093/molbev/msr281. Epub 2011 Nov 15.


DOG1 expression is predicted by the seed-maturation environment and contributes to geographical variation in germination in Arabidopsis thaliana.

Chiang GC, Bartsch M, Barua D, Nakabayashi K, Debieu M, Kronholm I, Koornneef M, Soppe WJ, Donohue K, De Meaux J.

Mol Ecol. 2011 Aug;20(16):3336-49. doi: 10.1111/j.1365-294X.2011.05181.x. Epub 2011 Jul 8.


Genetic and evolutionary perspectives on the interplay between plant immunity and development.

Alcázar R, Reymond M, Schmitz G, de Meaux J.

Curr Opin Plant Biol. 2011 Aug;14(4):378-84. doi: 10.1016/j.pbi.2011.04.001. Epub 2011 May 9. Review.


Arabidopsis thaliana leaf form evolved via loss of KNOX expression in leaves in association with a selective sweep.

Piazza P, Bailey CD, Cartolano M, Krieger J, Cao J, Ossowski S, Schneeberger K, He F, de Meaux J, Hall N, Macleod N, Filatov D, Hay A, Tsiantis M.

Curr Biol. 2010 Dec 21;20(24):2223-8. doi: 10.1016/j.cub.2010.11.037. Epub 2010 Dec 2.


Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions.

Alcázar R, García AV, Kronholm I, de Meaux J, Koornneef M, Parker JE, Reymond M.

Nat Genet. 2010 Dec;42(12):1135-9. doi: 10.1038/ng.704. Epub 2010 Oct 31.


Influence of mutation rate on estimators of genetic differentiation--lessons from Arabidopsis thaliana.

Kronholm I, Loudet O, de Meaux J.

BMC Genet. 2010 May 1;11:33. doi: 10.1186/1471-2156-11-33. Erratum in: BMC Genet. 2010;11:88.


Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M.

Nature. 2010 Jun 3;465(7298):627-31. doi: 10.1038/nature08800. Epub 2010 Mar 24.


Assessing the influence of adjacent gene orientation on the evolution of gene upstream regions in Arabidopsis thaliana.

He F, Chen WH, Collins S, Acquisti C, Goebel U, Ramos-Onsins S, Lercher MJ, de Meaux J.

Genetics. 2010 Jun;185(2):695-701. doi: 10.1534/genetics.110.114629. Epub 2010 Mar 16.


Co-expression of neighbouring genes in Arabidopsis: separating chromatin effects from direct interactions.

Chen WH, de Meaux J, Lercher MJ.

BMC Genomics. 2010 Mar 16;11:178. doi: 10.1186/1471-2164-11-178.


Adaptation to different rates of environmental change in Chlamydomonas.

Collins S, de Meaux J.

Evolution. 2009 Nov;63(11):2952-65. doi: 10.1111/j.1558-5646.2009.00770.x. Epub 2009 Jul 10.

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