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Results: 1 to 20 of 53

1.

Overexpression of the Aspergillus niger GatA transporter leads to preferential use of D-galacturonic acid over D-xylose.

Sloothaak J, Schilders M, Schaap PJ, de Graaff LH.

AMB Express. 2014 Aug 23;4:66. doi: 10.1186/s13568-014-0066-3. eCollection 2014.

PMID:
25177540
[PubMed]
Free PMC Article
2.

Pathway transfer in fungi: Transporters are the key to success.

van der Straat L, de Graaff LH.

Bioengineered. 2014 Jul 17;5(5). [Epub ahead of print]

PMID:
25033213
[PubMed - as supplied by publisher]
3.

Expression of the Aspergillus terreus itaconic acid biosynthesis cluster in Aspergillus niger.

van der Straat L, Vernooij M, Lammers M, van den Berg W, Schonewille T, Cordewener J, van der Meer I, Koops A, de Graaff LH.

Microb Cell Fact. 2014 Jan 17;13:11. doi: 10.1186/1475-2859-13-11.

PMID:
24438100
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A novel class of fungal lipoxygenases.

Heshof R, Jylhä S, Haarmann T, Jørgensen AL, Dalsgaard TK, de Graaff LH.

Appl Microbiol Biotechnol. 2014 Feb;98(3):1261-70. doi: 10.1007/s00253-013-5392-x. Epub 2013 Nov 26.

PMID:
24276623
[PubMed - in process]
5.

Overexpression of a modified 6-phosphofructo-1-kinase results in an increased itaconic acid productivity in Aspergillus niger.

van der Straat L, Tamayo-Ramos JA, Schonewille T, de Graaff LH.

AMB Express. 2013 Sep 13;3(1):57. doi: 10.1186/2191-0855-3-57.

PMID:
24034235
[PubMed]
Free PMC Article
6.

Biocatalytic potential of laccase-like multicopper oxidases from Aspergillus niger.

Tamayo-Ramos JA, van Berkel WJ, de Graaff LH.

Microb Cell Fact. 2012 Dec 27;11:165. doi: 10.1186/1475-2859-11-165.

PMID:
23270588
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Evaluation of design strategies for time course experiments in genetic networks: case study of the XlnR regulon in Aspergillus niger.

Omony J, Mach-Aigner AR, de Graaff LH, van Straten G, van Boxtel AJ.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Sep-Oct;9(5):1316-25.

PMID:
22529332
[PubMed - indexed for MEDLINE]
8.

Metabolic engineering of Rhizopus oryzae for the production of platform chemicals.

Meussen BJ, de Graaff LH, Sanders JP, Weusthuis RA.

Appl Microbiol Biotechnol. 2012 May;94(4):875-86. doi: 10.1007/s00253-012-4033-0. Epub 2012 Apr 13. Review.

PMID:
22526790
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

d-Xylose concentration-dependent hydrolase expression profiles and the function of CreA and XlnR in Aspergillus niger.

Mach-Aigner AR, Omony J, Jovanovic B, van Boxtel AJ, de Graaff LH.

Appl Environ Microbiol. 2012 May;78(9):3145-55. doi: 10.1128/AEM.07772-11. Epub 2012 Feb 17.

PMID:
22344641
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The Aspergillus niger multicopper oxidase family: analysis and overexpression of laccase-like encoding genes.

Ramos JA, Barends S, Verhaert RM, de Graaff LH.

Microb Cell Fact. 2011 Oct 8;10:78. doi: 10.1186/1475-2859-10-78.

PMID:
21981827
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Modeling and analysis of the dynamic behavior of the XlnR regulon in Aspergillus niger.

Omony J, de Graaff LH, van Straten G, van Boxtel AJ.

BMC Syst Biol. 2011 Jun 20;5 Suppl 1:S14. doi: 10.1186/1752-0509-5-S1-S14.

PMID:
21689473
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Proteomic analysis of the secretory response of Aspergillus niger to D-maltose and D-xylose.

de Oliveira JM, van Passel MW, Schaap PJ, de Graaff LH.

PLoS One. 2011;6(6):e20865. doi: 10.1371/journal.pone.0020865. Epub 2011 Jun 17.

PMID:
21698107
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Dual transcriptional profiling of a bacterial/fungal confrontation: Collimonas fungivorans versus Aspergillus niger.

Mela F, Fritsche K, de Boer W, van Veen JA, de Graaff LH, van den Berg M, Leveau JH.

ISME J. 2011 Sep;5(9):1494-504. doi: 10.1038/ismej.2011.29. Epub 2011 May 26.

PMID:
21614084
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Proteomics of industrial fungi: trends and insights for biotechnology.

de Oliveira JM, de Graaff LH.

Appl Microbiol Biotechnol. 2011 Jan;89(2):225-37. doi: 10.1007/s00253-010-2900-0. Epub 2010 Oct 5. Review.

PMID:
20922379
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Shotgun proteomics of Aspergillus niger microsomes upon D-xylose induction.

Ferreira de Oliveira JM, van Passel MW, Schaap PJ, de Graaff LH.

Appl Environ Microbiol. 2010 Jul;76(13):4421-9. doi: 10.1128/AEM.00482-10. Epub 2010 May 7.

PMID:
20453123
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Identification of modules in Aspergillus niger by gene co-expression network analysis.

van den Berg RA, Braaksma M, van der Veen D, van der Werf MJ, Punt PJ, van der Oost J, de Graaff LH.

Fungal Genet Biol. 2010 Jun;47(6):539-50. doi: 10.1016/j.fgb.2010.03.005. Epub 2010 Mar 27.

PMID:
20350613
[PubMed - indexed for MEDLINE]
17.

Analysis of variance components reveals the contribution of sample processing to transcript variation.

van der Veen D, Oliveira JM, van den Berg WA, de Graaff LH.

Appl Environ Microbiol. 2009 Apr;75(8):2414-22. doi: 10.1128/AEM.02270-08. Epub 2009 Feb 20.

PMID:
19233957
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Mononucleotide repeats are asymmetrically distributed in fungal genes.

van Passel MW, de Graaff LH.

BMC Genomics. 2008 Dec 11;9:596. doi: 10.1186/1471-2164-9-596.

PMID:
19077233
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Efficient cloning system for construction of gene silencing vectors in Aspergillus niger.

Oliveira JM, van der Veen D, de Graaff LH, Qin L.

Appl Microbiol Biotechnol. 2008 Oct;80(5):917-24. doi: 10.1007/s00253-008-1640-x. Epub 2008 Aug 15.

PMID:
18704394
[PubMed - indexed for MEDLINE]
20.

CreA mediates repression of the regulatory gene xlnR which controls the production of xylanolytic enzymes in Aspergillus nidulans.

Tamayo EN, Villanueva A, Hasper AA, de Graaff LH, Ramón D, Orejas M.

Fungal Genet Biol. 2008 Jun;45(6):984-93. doi: 10.1016/j.fgb.2008.03.002. Epub 2008 Mar 10.

PMID:
18420433
[PubMed - indexed for MEDLINE]

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