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Results: 1 to 20 of 102

1.

Proteins of unknown biochemical function - A persistent problem and a roadmap to help overcome it.

Niehaus TD, Thamm AM, de Crécy-Lagard V, Hanson AD.

Plant Physiol. 2015 Aug 12. pii: pp.00959.2015. [Epub ahead of print] No abstract available.

PMID:
26269542
2.

Functional Diversity of Haloacid Dehalogenase Superfamily Phosphatases from Saccharomyces cerevisiae: BIOCHEMICAL, STRUCTURAL, AND EVOLUTIONARY INSIGHTS.

Kuznetsova E, Nocek B, Brown G, Makarova KS, Flick R, Wolf YI, Khusnutdinova A, Evdokimova E, Jin K, Tan K, Hanson AD, Hasnain G, Zallot R, de Crécy-Lagard V, Babu M, Savchenko A, Joachimiak A, Edwards AM, Koonin EV, Yakunin AF.

J Biol Chem. 2015 Jul 24;290(30):18678-98. doi: 10.1074/jbc.M115.657916. Epub 2015 Jun 12.

PMID:
26071590
3.

The Levels of a Universally Conserved tRNA Modification Regulate Cell Growth.

Rojas-Benitez D, Thiaville PC, de Crécy-Lagard V, Glavic A.

J Biol Chem. 2015 Jul 24;290(30):18699-707. doi: 10.1074/jbc.M115.665406. Epub 2015 Jun 10.

PMID:
26063805
4.

Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes.

Magnúsdóttir S, Ravcheev D, de Crécy-Lagard V, Thiele I.

Front Genet. 2015 Apr 20;6:148. doi: 10.3389/fgene.2015.00148. eCollection 2015.

5.

The emerging role of complex modifications of tRNALys UUU in signaling pathways.

Thiaville PC, de Crécy-Lagard V.

Microb Cell. 2015 Jan;2(1):1-4. No abstract available.

6.

Diversity of the biosynthesis pathway for threonylcarbamoyladenosine (t(6)A), a universal modification of tRNA.

Thiaville PC, Iwata-Reuyl D, de Crécy-Lagard V.

RNA Biol. 2014;11(12):1529-39. doi: 10.4161/15476286.2014.992277.

PMID:
25629598
7.

A directed-overflow and damage-control N-glycosidase in riboflavin biosynthesis.

Frelin O, Huang L, Hasnain G, Jeffryes JG, Ziemak MJ, Rocca JR, Wang B, Rice J, Roje S, Yurgel SN, Gregory JF 3rd, Edison AS, Henry CS, de Crécy-Lagard V, Hanson AD.

Biochem J. 2015 Feb 15;466(1):137-45. doi: 10.1042/BJ20141237.

8.
9.

Variations in metabolic pathways create challenges for automated metabolic reconstructions: Examples from the tetrahydrofolate synthesis pathway.

de Crécy-Lagard V.

Comput Struct Biotechnol J. 2014 Jun 11;10(16):41-50. doi: 10.1016/j.csbj.2014.05.008. eCollection 2014 Jun. Review.

10.

Cross kingdom functional conservation of the core universally conserved threonylcarbamoyladenosine tRNA synthesis enzymes.

Thiaville PC, El Yacoubi B, Perrochia L, Hecker A, Prigent M, Thiaville JJ, Forterre P, Namy O, Basta T, de Crécy-Lagard V.

Eukaryot Cell. 2014 Sep;13(9):1222-31. doi: 10.1128/EC.00147-14. Epub 2014 Jul 18.

11.

Salvage of the thiamin pyrimidine moiety by plant TenA proteins lacking an active-site cysteine.

Zallot R, Yazdani M, Goyer A, Ziemak MJ, Guan JC, McCarty DR, de Crécy-Lagard V, Gerdes S, Garrett TJ, Benach J, Hunt JF, Shintani DK, Hanson AD.

Biochem J. 2014 Oct 1;463(1):145-55. doi: 10.1042/BJ20140522.

PMID:
25014715
12.

Promiscuous and adaptable enzymes fill "holes" in the tetrahydrofolate pathway in Chlamydia species.

Adams NE, Thiaville JJ, Proestos J, Juárez-Vázquez AL, McCoy AJ, Barona-Gómez F, Iwata-Reuyl D, de Crécy-Lagard V, Maurelli AT.

MBio. 2014 Jul 8;5(4):e01378-14. doi: 10.1128/mBio.01378-14.

13.

High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource.

Seaver SM, Gerdes S, Frelin O, Lerma-Ortiz C, Bradbury LM, Zallot R, Hasnain G, Niehaus TD, El Yacoubi B, Pasternak S, Olson R, Pusch G, Overbeek R, Stevens R, de Crécy-Lagard V, Ware D, Hanson AD, Henry CS.

Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9645-50. doi: 10.1073/pnas.1401329111. Epub 2014 Jun 9.

14.

Plant, animal, and fungal micronutrient queuosine is salvaged by members of the DUF2419 protein family.

Zallot R, Brochier-Armanet C, Gaston KW, Forouhar F, Limbach PA, Hunt JF, de Crécy-Lagard V.

ACS Chem Biol. 2014 Aug 15;9(8):1812-25. doi: 10.1021/cb500278k. Epub 2014 Jun 17.

15.

Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes.

Grosjean H, Breton M, Sirand-Pugnet P, Tardy F, Thiaucourt F, Citti C, Barré A, Yoshizawa S, Fourmy D, de Crécy-Lagard V, Blanchard A.

PLoS Genet. 2014 May 8;10(5):e1004363. doi: 10.1371/journal.pgen.1004363. eCollection 2014 May.

16.

Mannitol-1-phosphate dehydrogenases/phosphatases: a family of novel bifunctional enzymes for bacterial adaptation to osmotic stress.

Sand M, Rodrigues M, González JM, de Crécy-Lagard V, Santos H, Müller V, Averhoff B.

Environ Microbiol. 2015 Mar;17(3):711-9. doi: 10.1111/1462-2920.12503. Epub 2014 Jun 4.

PMID:
24800891
17.

Integrative data-mining tools to link gene and function.

El Yacoubi B, de Crécy-Lagard V.

Methods Mol Biol. 2014;1101:43-66. doi: 10.1007/978-1-62703-721-1_4.

PMID:
24233777
18.

The COMBREX project: design, methodology, and initial results.

Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.

PLoS Biol. 2013;11(8):e1001638. doi: 10.1371/journal.pbio.1001638. Epub 2013 Aug 27. No abstract available.

19.

Identification of the thiamin salvage enzyme thiazole kinase in Arabidopsis and maize.

Yazdani M, Zallot R, Tunc-Ozdemir M, de Crécy-Lagard V, Shintani DK, Hanson AD.

Phytochemistry. 2013 Oct;94:68-73. doi: 10.1016/j.phytochem.2013.05.017. Epub 2013 Jun 28.

PMID:
23816351
20.

Identification of mitochondrial coenzyme a transporters from maize and Arabidopsis.

Zallot R, Agrimi G, Lerma-Ortiz C, Teresinski HJ, Frelin O, Ellens KW, Castegna A, Russo A, de Crécy-Lagard V, Mullen RT, Palmieri F, Hanson AD.

Plant Physiol. 2013 Jun;162(2):581-8. doi: 10.1104/pp.113.218081. Epub 2013 Apr 16.

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