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Results: 1 to 20 of 27

1.

Biophysical constraints on the evolution of tissue structure and function.

Hunter PJ, de Bono B.

J Physiol. 2014 Jun 1;592(Pt 11):2389-401. doi: 10.1113/jphysiol.2014.273235.

PMID:
24882821
[PubMed - in process]
2.

A vision and strategy for the virtual physiological human: 2012 update.

Hunter P, Chapman T, Coveney PV, de Bono B, Diaz V, Fenner J, Frangi AF, Harris P, Hose R, Kohl P, Lawford P, McCormack K, Mendes M, Omholt S, Quarteroni A, Shublaq N, Skår J, Stroetmann K, Tegner J, Thomas SR, Tollis I, Tsamardinos I, van Beek JH, Viceconti M.

Interface Focus. 2013 Apr 6;3(2):20130004. doi: 10.1098/rsfs.2013.0004.

PMID:
24427536
[PubMed]
Free PMC Article
3.

HuPSON: the human physiology simulation ontology.

Gündel M, Younesi E, Malhotra A, Wang J, Li H, Zhang B, de Bono B, Mevissen HT, Hofmann-Apitius M.

J Biomed Semantics. 2013 Nov 22;4(1):35. doi: 10.1186/2041-1480-4-35.

PMID:
24267822
[PubMed]
Free Article
4.

Functional tissue units and their primary tissue motifs in multi-scale physiology.

de Bono B, Grenon P, Baldock R, Hunter P.

J Biomed Semantics. 2013 Oct 8;4(1):22. doi: 10.1186/2041-1480-4-22.

PMID:
24103658
[PubMed]
Free Article
5.

Eliciting candidate anatomical routes for protein interactions: a scenario from endocrine physiology.

Grenon P, de Bono B.

BMC Bioinformatics. 2013 Apr 16;14:131. doi: 10.1186/1471-2105-14-131.

PMID:
23590598
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Integrating knowledge representation and quantitative modelling in physiology.

de Bono B, Hunter P.

Biotechnol J. 2012 Aug;7(8):958-72. doi: 10.1002/biot.201100304.

PMID:
22887885
[PubMed - indexed for MEDLINE]
7.

ApiNATOMY: a novel toolkit for visualizing multiscale anatomy schematics with phenotype-related information.

de Bono B, Grenon P, Sammut SJ.

Hum Mutat. 2012 May;33(5):837-48.

PMID:
22616108
[PubMed - indexed for MEDLINE]
8.

An infrastructure for ontology-based information systems in biomedicine: RICORDO case study.

Wimalaratne SM, Grenon P, Hoehndorf R, Gkoutos GV, de Bono B.

Bioinformatics. 2012 Feb 1;28(3):448-50. doi: 10.1093/bioinformatics/btr662. Epub 2011 Nov 29.

PMID:
22130590
[PubMed - indexed for MEDLINE]
Free Article
9.

The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions.

de Bono B, Hoehndorf R, Wimalaratne S, Gkoutos G, Grenon P.

BMC Res Notes. 2011 Aug 30;4:313. doi: 10.1186/1756-0500-4-313.

PMID:
21878109
[PubMed]
Free PMC Article
10.

Integrating systems biology models and biomedical ontologies.

Hoehndorf R, Dumontier M, Gennari JH, Wimalaratne S, de Bono B, Cook DL, Gkoutos GV.

BMC Syst Biol. 2011 Aug 11;5:124. doi: 10.1186/1752-0509-5-124.

PMID:
21835028
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Transcription profiling in human platelets reveals LRRFIP1 as a novel protein regulating platelet function.

Goodall AH, Burns P, Salles I, Macaulay IC, Jones CI, Ardissino D, de Bono B, Bray SL, Deckmyn H, Dudbridge F, Fitzgerald DJ, Garner SF, Gusnanto A, Koch K, Langford C, O'Connor MN, Rice CM, Stemple D, Stephens J, Trip MD, Zwaginga JJ, Samani NJ, Watkins NA, Maguire PB, Ouwehand WH; Bloodomics Consortium.

Blood. 2010 Nov 25;116(22):4646-56. doi: 10.1182/blood-2010-04-280925. Epub 2010 Sep 10.

PMID:
20833976
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A vision and strategy for the virtual physiological human in 2010 and beyond.

Hunter P, Coveney PV, de Bono B, Diaz V, Fenner J, Frangi AF, Harris P, Hose R, Kohl P, Lawford P, McCormack K, Mendes M, Omholt S, Quarteroni A, Skår J, Tegner J, Randall Thomas S, Tollis I, Tsamardinos I, van Beek JH, Viceconti M.

Philos Trans A Math Phys Eng Sci. 2010 Jun 13;368(1920):2595-614. doi: 10.1098/rsta.2010.0048.

PMID:
20439264
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A functional genomics approach reveals novel quantitative trait loci associated with platelet signaling pathways.

Jones CI, Bray S, Garner SF, Stephens J, de Bono B, Angenent WG, Bentley D, Burns P, Coffey A, Deloukas P, Earthrowl M, Farndale RW, Hoylaerts MF, Koch K, Rankin A, Rice CM, Rogers J, Samani NJ, Steward M, Walker A, Watkins NA, Akkerman JW, Dudbridge F, Goodall AH, Ouwehand WH; Bloodomics Consortium.

Blood. 2009 Aug 13;114(7):1405-16. doi: 10.1182/blood-2009-02-202614. Epub 2009 May 8.

PMID:
19429868
[PubMed - indexed for MEDLINE]
Free Article
14.

Comparative genomics indicates the mammalian CD33rSiglec locus evolved by an ancient large-scale inverse duplication and suggests all Siglecs share a common ancestral region.

Cao H, de Bono B, Belov K, Wong ES, Trowsdale J, Barrow AD.

Immunogenetics. 2009 May;61(5):401-17. doi: 10.1007/s00251-009-0372-0. Epub 2009 Apr 1.

PMID:
19337729
[PubMed - indexed for MEDLINE]
15.

A HaemAtlas: characterizing gene expression in differentiated human blood cells.

Watkins NA, Gusnanto A, de Bono B, De S, Miranda-Saavedra D, Hardie DL, Angenent WG, Attwood AP, Ellis PD, Erber W, Foad NS, Garner SF, Isacke CM, Jolley J, Koch K, Macaulay IC, Morley SL, Rendon A, Rice KM, Taylor N, Thijssen-Timmer DC, Tijssen MR, van der Schoot CE, Wernisch L, Winzer T, Dudbridge F, Buckley CD, Langford CF, Teichmann S, Göttgens B, Ouwehand WH; Bloodomics Consortium.

Blood. 2009 May 7;113(19):e1-9. doi: 10.1182/blood-2008-06-162958. Epub 2009 Feb 19.

PMID:
19228925
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Functional genomics in zebrafish permits rapid characterization of novel platelet membrane proteins.

O'Connor MN, Salles II, Cvejic A, Watkins NA, Walker A, Garner SF, Jones CI, Macaulay IC, Steward M, Zwaginga JJ, Bray SL, Dudbridge F, de Bono B, Goodall AH, Deckmyn H, Stemple DL, Ouwehand WH; Bloodomics Consortium.

Blood. 2009 May 7;113(19):4754-62. doi: 10.1182/blood-2008-06-162693. Epub 2008 Dec 24.

PMID:
19109564
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Reactome knowledgebase of human biological pathways and processes.

Matthews L, Gopinath G, Gillespie M, Caudy M, Croft D, de Bono B, Garapati P, Hemish J, Hermjakob H, Jassal B, Kanapin A, Lewis S, Mahajan S, May B, Schmidt E, Vastrik I, Wu G, Birney E, Stein L, D'Eustachio P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D619-22. doi: 10.1093/nar/gkn863. Epub 2008 Nov 3.

PMID:
18981052
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

SIGLEC16 encodes a DAP12-associated receptor expressed in macrophages that evolved from its inhibitory counterpart SIGLEC11 and has functional and non-functional alleles in humans.

Cao H, Lakner U, de Bono B, Traherne JA, Trowsdale J, Barrow AD.

Eur J Immunol. 2008 Aug;38(8):2303-15. doi: 10.1002/eji.200738078.

PMID:
18629938
[PubMed - indexed for MEDLINE]
19.

Characterization of the opossum immune genome provides insights into the evolution of the mammalian immune system.

Belov K, Sanderson CE, Deakin JE, Wong ES, Assange D, McColl KA, Gout A, de Bono B, Barrow AD, Speed TP, Trowsdale J, Papenfuss AT.

Genome Res. 2007 Jul;17(7):982-91. Epub 2007 May 10.

PMID:
17495011
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Reactome: a knowledge base of biologic pathways and processes.

Vastrik I, D'Eustachio P, Schmidt E, Gopinath G, Croft D, de Bono B, Gillespie M, Jassal B, Lewis S, Matthews L, Wu G, Birney E, Stein L.

Genome Biol. 2007;8(3):R39. Erratum in: Genome Biol. 2009 Feb 4;10(2):402. Joshi-Tope, Geeta [removed].

PMID:
17367534
[PubMed - indexed for MEDLINE]
Free PMC Article

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