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Results: 1 to 20 of 22

1.

Dissecting genomic diversity, one cell at a time.

Blainey PC, Quake SR.

Nat Methods. 2014 Jan;11(1):19-21. No abstract available. Erratum in: Nat Methods. 2014 Mar;11(3):349.

PMID:
24524132
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Optofluidic cell selection from complex microbial communities for single-genome analysis.

Landry ZC, Giovanonni SJ, Quake SR, Blainey PC.

Methods Enzymol. 2013;531:61-90. doi: 10.1016/B978-0-12-407863-5.00004-6.

PMID:
24060116
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage.

Dodsworth JA, Blainey PC, Murugapiran SK, Swingley WD, Ross CA, Tringe SG, Chain PS, Scholz MB, Lo CC, Raymond J, Quake SR, Hedlund BP.

Nat Commun. 2013;4:1854. doi: 10.1038/ncomms2884.

PMID:
23673639
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The future is now: single-cell genomics of bacteria and archaea.

Blainey PC.

FEMS Microbiol Rev. 2013 May;37(3):407-27. doi: 10.1111/1574-6976.12015. Epub 2013 Feb 11. Review.

PMID:
23298390
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: IV. viral proteinase slides along DNA to locate and process its substrates.

Blainey PC, Graziano V, Pérez-Berná AJ, McGrath WJ, Flint SJ, San Martín C, Xie XS, Mangel WF.

J Biol Chem. 2013 Jan 18;288(3):2092-102. doi: 10.1074/jbc.M112.407460. Epub 2012 Oct 7.

PMID:
23043138
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: II. adenovirus proteinase is activated in an unusual one-dimensional biochemical reaction.

Graziano V, Luo G, Blainey PC, Pérez-Berná AJ, McGrath WJ, Flint SJ, San Martín C, Xie XS, Mangel WF.

J Biol Chem. 2013 Jan 18;288(3):2068-80. doi: 10.1074/jbc.M112.407312. Epub 2012 Oct 7.

PMID:
23043137
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: I. binding to DNA AND to hexon of the precursor to protein VI, pVI, of human adenovirus.

Graziano V, McGrath WJ, Suomalainen M, Greber UF, Freimuth P, Blainey PC, Luo G, Xie XS, Mangel WF.

J Biol Chem. 2013 Jan 18;288(3):2059-67. doi: 10.1074/jbc.M112.377150. Epub 2012 Oct 7.

PMID:
23043136
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A Single-cell genome for Thiovulum sp.

Marshall IP, Blainey PC, Spormann AM, Quake SR.

Appl Environ Microbiol. 2012 Dec;78(24):8555-63. doi: 10.1128/AEM.02314-12. Epub 2012 Sep 28.

PMID:
23023751
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Quantitative analysis of the human airway microbial ecology reveals a pervasive signature for cystic fibrosis.

Blainey PC, Milla CE, Cornfield DN, Quake SR.

Sci Transl Med. 2012 Sep 26;4(153):153ra130.

PMID:
23019655
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB).

Pamp SJ, Harrington ED, Quake SR, Relman DA, Blainey PC.

Genome Res. 2012 Jun;22(6):1107-19. doi: 10.1101/gr.131482.111. Epub 2012 Mar 20.

PMID:
22434425
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genomic analysis at the single-cell level.

Kalisky T, Blainey P, Quake SR.

Annu Rev Genet. 2011;45:431-45. doi: 10.1146/annurev-genet-102209-163607. Epub 2011 Sep 19. Review.

PMID:
21942365
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Partial genome assembly for a candidate division OP11 single cell from an anoxic spring (Zodletone Spring, Oklahoma).

Youssef NH, Blainey PC, Quake SR, Elshahed MS.

Appl Environ Microbiol. 2011 Nov;77(21):7804-14. doi: 10.1128/AEM.06059-11. Epub 2011 Sep 9.

PMID:
21908640
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis.

Blainey PC, Mosier AC, Potanina A, Francis CA, Quake SR.

PLoS One. 2011 Feb 22;6(2):e16626. doi: 10.1371/journal.pone.0016626.

PMID:
21364937
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Digital MDA for enumeration of total nucleic acid contamination.

Blainey PC, Quake SR.

Nucleic Acids Res. 2011 Mar;39(4):e19. doi: 10.1093/nar/gkq1074. Epub 2010 Nov 11.

PMID:
21071419
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Nonspecifically bound proteins spin while diffusing along DNA.

Blainey PC, Luo G, Kou SC, Mangel WF, Verdine GL, Bagchi B, Xie XS.

Nat Struct Mol Biol. 2009 Dec;16(12):1224-9. doi: 10.1038/nsmb.1716. Epub 2009 Nov 8.

PMID:
19898474
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Digital PCR provides sensitive and absolute calibration for high throughput sequencing.

White RA 3rd, Blainey PC, Fan HC, Quake SR.

BMC Genomics. 2009 Mar 19;10:116. doi: 10.1186/1471-2164-10-116. Erratum in: BMC Genomics. 2009;10:541.

PMID:
19298667
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Diffusion constant of a nonspecifically bound protein undergoing curvilinear motion along DNA.

Bagchi B, Blainey PC, Xie XS.

J Phys Chem B. 2008 May 15;112(19):6282-4. doi: 10.1021/jp077568f. Epub 2008 Mar 6.

PMID:
18321088
[PubMed - indexed for MEDLINE]
18.

Multiplexed single-molecule assay for enzymatic activity on flow-stretched DNA.

Kim S, Blainey PC, Schroeder CM, Xie XS.

Nat Methods. 2007 May;4(5):397-9. Epub 2007 Apr 15.

PMID:
17435763
[PubMed - indexed for MEDLINE]
19.

A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

Blainey PC, van Oijen AM, Banerjee A, Verdine GL, Xie XS.

Proc Natl Acad Sci U S A. 2006 Apr 11;103(15):5752-7. Epub 2006 Apr 3.

PMID:
16585517
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder.

van Oijen AM, Blainey PC, Crampton DJ, Richardson CC, Ellenberger T, Xie XS.

Science. 2003 Aug 29;301(5637):1235-8.

PMID:
12947199
[PubMed - indexed for MEDLINE]
Free Article

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