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Items: 1 to 20 of 32

1.

Molecular sled sequences are common in mammalian proteins.

Xiong K, Blainey PC.

Nucleic Acids Res. 2016 Mar 18;44(5):2266-73. doi: 10.1093/nar/gkw035. Epub 2016 Feb 8.

2.

Molecular sled is an eleven-amino acid vehicle facilitating biochemical interactions via sliding components along DNA.

Mangel WF, McGrath WJ, Xiong K, Graziano V, Blainey PC.

Nat Commun. 2016 Feb 2;7:10202. doi: 10.1038/ncomms10202.

3.

A microfluidic platform enabling single-cell RNA-seq of multigenerational lineages.

Kimmerling RJ, Lee Szeto G, Li JW, Genshaft AS, Kazer SW, Payer KR, de Riba Borrajo J, Blainey PC, Irvine DJ, Shalek AK, Manalis SR.

Nat Commun. 2016 Jan 6;7:10220. doi: 10.1038/ncomms10220.

4.

Tools for the Microbiome: Nano and Beyond.

Biteen JS, Blainey PC, Cardon ZG, Chun M, Church GM, Dorrestein PC, Fraser SE, Gilbert JA, Jansson JK, Knight R, Miller JF, Ozcan A, Prather KA, Quake SR, Ruby EG, Silver PA, Taha S, van den Engh G, Weiss PS, Wong GC, Wright AT, Young TD.

ACS Nano. 2016 Jan 26;10(1):6-37. doi: 10.1021/acsnano.5b07826. Epub 2015 Dec 22.

PMID:
26695070
5.

Simple Bulk Readout of Digital Nucleic Acid Quantification Assays.

Morinishi LS, Blainey P.

J Vis Exp. 2015 Sep 24;(103). doi: 10.3791/52925.

PMID:
26436576
6.

Sampling distributions and the bootstrap.

Kulesa A, Krzywinski M, Blainey P, Altman N.

Nat Methods. 2015 Jun;12(6):477-8. No abstract available.

7.

Points of significance: nested designs. For studies with hierarchical noise sources, use a nested analysis of variance approach.

Krzywinski M, Altman N, Blainey P.

Nat Methods. 2014 Oct;11(10):977-8. No abstract available.

PMID:
25392877
8.

Optimal estimation of diffusion coefficients from single-particle trajectories.

Vestergaard CL, Blainey PC, Flyvbjerg H.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Feb;89(2):022726. Epub 2014 Feb 28.

PMID:
25353527
9.

Points of significance: replication.

Blainey P, Krzywinski M, Altman N.

Nat Methods. 2014 Sep;11(9):879-80. No abstract available.

PMID:
25317452
10.

Laser microdissection of the alveolar duct enables single-cell genomic analysis.

Bennett RD, Ysasi AB, Belle JM, Wagner WL, Konerding MA, Blainey PC, Pyne S, Mentzer SJ.

Front Oncol. 2014 Sep 24;4:260. doi: 10.3389/fonc.2014.00260. eCollection 2014.

11.

Dissecting genomic diversity, one cell at a time.

Blainey PC, Quake SR.

Nat Methods. 2014 Jan;11(1):19-21. No abstract available. Erratum in: Nat Methods. 2014 Mar;11(3):349.

12.

Optofluidic cell selection from complex microbial communities for single-genome analysis.

Landry ZC, Giovanonni SJ, Quake SR, Blainey PC.

Methods Enzymol. 2013;531:61-90. doi: 10.1016/B978-0-12-407863-5.00004-6.

13.

Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage.

Dodsworth JA, Blainey PC, Murugapiran SK, Swingley WD, Ross CA, Tringe SG, Chain PS, Scholz MB, Lo CC, Raymond J, Quake SR, Hedlund BP.

Nat Commun. 2013;4:1854. doi: 10.1038/ncomms2884.

14.

The future is now: single-cell genomics of bacteria and archaea.

Blainey PC.

FEMS Microbiol Rev. 2013 May;37(3):407-27. doi: 10.1111/1574-6976.12015. Epub 2013 Feb 11. Review.

15.

Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: IV. viral proteinase slides along DNA to locate and process its substrates.

Blainey PC, Graziano V, Pérez-Berná AJ, McGrath WJ, Flint SJ, San Martín C, Xie XS, Mangel WF.

J Biol Chem. 2013 Jan 18;288(3):2092-102. doi: 10.1074/jbc.M112.407460. Epub 2012 Oct 7.

16.

Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: II. adenovirus proteinase is activated in an unusual one-dimensional biochemical reaction.

Graziano V, Luo G, Blainey PC, Pérez-Berná AJ, McGrath WJ, Flint SJ, San Martín C, Xie XS, Mangel WF.

J Biol Chem. 2013 Jan 18;288(3):2068-80. doi: 10.1074/jbc.M112.407312. Epub 2012 Oct 7.

17.

Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: I. binding to DNA AND to hexon of the precursor to protein VI, pVI, of human adenovirus.

Graziano V, McGrath WJ, Suomalainen M, Greber UF, Freimuth P, Blainey PC, Luo G, Xie XS, Mangel WF.

J Biol Chem. 2013 Jan 18;288(3):2059-67. doi: 10.1074/jbc.M112.377150. Epub 2012 Oct 7.

18.

A Single-cell genome for Thiovulum sp.

Marshall IP, Blainey PC, Spormann AM, Quake SR.

Appl Environ Microbiol. 2012 Dec;78(24):8555-63. doi: 10.1128/AEM.02314-12. Epub 2012 Sep 28.

19.

Quantitative analysis of the human airway microbial ecology reveals a pervasive signature for cystic fibrosis.

Blainey PC, Milla CE, Cornfield DN, Quake SR.

Sci Transl Med. 2012 Sep 26;4(153):153ra130.

20.

Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB).

Pamp SJ, Harrington ED, Quake SR, Relman DA, Blainey PC.

Genome Res. 2012 Jun;22(6):1107-19. doi: 10.1101/gr.131482.111. Epub 2012 Mar 20.

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