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Results: 1 to 20 of 33

1.

Targeting environmental adaptation in the monocot model Brachypodium distachyon: a multi-faceted approach.

Dell'Acqua M, Zuccolo A, Tuna M, Gianfranceschi L, Pè ME.

BMC Genomics. 2014 Sep 18;15:801. doi: 10.1186/1471-2164-15-801.

PMID:
25236859
[PubMed - in process]
Free PMC Article
2.

Comparative in silico analysis of EST-SSRs in angiosperm and gymnosperm tree genera.

Ranade SS, Lin YC, Zuccolo A, Van de Peer Y, García-Gil Mdel R.

BMC Plant Biol. 2014 Aug 21;14:220. doi: 10.1186/s12870-014-0220-8.

PMID:
25143005
[PubMed - in process]
Free PMC Article
3.

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.

Wang M, Yu Y, Haberer G, Marri PR, Fan C, Goicoechea JL, Zuccolo A, Song X, Kudrna D, Ammiraju JS, Cossu RM, Maldonado C, Chen J, Lee S, Sisneros N, de Baynast K, Golser W, Wissotski M, Kim W, Sanchez P, Ndjiondjop MN, Sanni K, Long M, Carney J, Panaud O, Wicker T, Machado CA, Chen M, Mayer KF, Rounsley S, Wing RA.

Nat Genet. 2014 Sep;46(9):982-8. doi: 10.1038/ng.3044. Epub 2014 Jul 27.

PMID:
25064006
[PubMed - in process]
4.

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.

Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, Cattonaro F, Del Fabbro C, Pinosio S, Zuccolo A, Chapman J, Grimwood J, Tadeo FR, Estornell LH, Muñoz-Sanz JV, Ibanez V, Herrero-Ortega A, Aleza P, Pérez-Pérez J, Ramón D, Brunel D, Luro F, Chen C, Farmerie WG, Desany B, Kodira C, Mohiuddin M, Harkins T, Fredrikson K, Burns P, Lomsadze A, Borodovsky M, Reforgiato G, Freitas-Astúa J, Quetier F, Navarro L, Roose M, Wincker P, Schmutz J, Morgante M, Machado MA, Talon M, Jaillon O, Ollitrault P, Gmitter F, Rokhsar D.

Nat Biotechnol. 2014 Jul;32(7):656-62. doi: 10.1038/nbt.2906. Epub 2014 Jun 8.

PMID:
24908277
[PubMed - indexed for MEDLINE]
5.

Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size.

Stival Sena J, Giguère I, Boyle B, Rigault P, Birol I, Zuccolo A, Ritland K, Ritland C, Bohlmann J, Jones S, Bousquet J, Mackay J.

BMC Plant Biol. 2014 Apr 16;14:95. doi: 10.1186/1471-2229-14-95.

PMID:
24734980
[PubMed - in process]
Free PMC Article
6.

Brain human monoclonal autoantibody from sydenham chorea targets dopaminergic neurons in transgenic mice and signals dopamine D2 receptor: implications in human disease.

Cox CJ, Sharma M, Leckman JF, Zuccolo J, Zuccolo A, Kovoor A, Swedo SE, Cunningham MW.

J Immunol. 2013 Dec 1;191(11):5524-41. doi: 10.4049/jimmunol.1102592. Epub 2013 Nov 1.

PMID:
24184556
[PubMed - indexed for MEDLINE]
7.

The Norway spruce genome sequence and conifer genome evolution.

Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S.

Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22.

PMID:
23698360
[PubMed - indexed for MEDLINE]
8.

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.

International Peach Genome Initiative, Verde I, Abbott AG, Scalabrin S, Jung S, Shu S, Marroni F, Zhebentyayeva T, Dettori MT, Grimwood J, Cattonaro F, Zuccolo A, Rossini L, Jenkins J, Vendramin E, Meisel LA, Decroocq V, Sosinski B, Prochnik S, Mitros T, Policriti A, Cipriani G, Dondini L, Ficklin S, Goodstein DM, Xuan P, Del Fabbro C, Aramini V, Copetti D, Gonzalez S, Horner DS, Falchi R, Lucas S, Mica E, Maldonado J, Lazzari B, Bielenberg D, Pirona R, Miculan M, Barakat A, Testolin R, Stella A, Tartarini S, Tonutti P, Arús P, Orellana A, Wells C, Main D, Vizzotto G, Silva H, Salamini F, Schmutz J, Morgante M, Rokhsar DS.

Nat Genet. 2013 May;45(5):487-94. doi: 10.1038/ng.2586. Epub 2013 Mar 24.

PMID:
23525075
[PubMed - indexed for MEDLINE]
9.

Re-sequencing of a virulent strain of Campylobacter jejuni NCTC11168 reveals potential virulence factors.

Cooper KK, Cooper MA, Zuccolo A, Joens LA.

Res Microbiol. 2013 Jan;164(1):6-11. doi: 10.1016/j.resmic.2012.10.002. Epub 2012 Oct 6.

PMID:
23046762
[PubMed - indexed for MEDLINE]
10.

CST-II's recognition domain for acceptor substrates in α-(2→8)-sialylations.

Li W, Zhang P, Zuccolo AJ, Zheng RB, Ling CC.

Carbohydr Res. 2011 Sep 27;346(13):1692-704. doi: 10.1016/j.carres.2011.05.009. Epub 2011 May 14.

PMID:
21658684
[PubMed - indexed for MEDLINE]
11.

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure.

Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, Paterson AH, Pires JC, Chanderbali A, Soltis DE, Chamala S, Barbazuk B, Soltis PS, Albert VA, Ma H, Mandoli D, Banks J, Carlson JE, Tomkins J, dePamphilis CW, Wing RA, Leebens-Mack J.

Genome Biol. 2011;12(5):R48. doi: 10.1186/gb-2011-12-5-r48. Epub 2011 May 27.

PMID:
21619600
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Complete genome sequence of Campylobacter jejuni strain S3.

Cooper KK, Cooper MA, Zuccolo A, Law B, Joens LA.

J Bacteriol. 2011 Mar;193(6):1491-2. doi: 10.1128/JB.01475-10. Epub 2011 Jan 7.

PMID:
21217004
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza.

Hurwitz BL, Kudrna D, Yu Y, Sebastian A, Zuccolo A, Jackson SA, Ware D, Wing RA, Stein L.

Plant J. 2010 Sep;63(6):990-1003. doi: 10.1111/j.1365-313X.2010.04293.x.

PMID:
20626650
[PubMed - indexed for MEDLINE]
14.

A draft physical map of a D-genome cotton species (Gossypium raimondii).

Lin L, Pierce GJ, Bowers JE, Estill JC, Compton RO, Rainville LK, Kim C, Lemke C, Rong J, Tang H, Wang X, Braidotti M, Chen AH, Chicola K, Collura K, Epps E, Golser W, Grover C, Ingles J, Karunakaran S, Kudrna D, Olive J, Tabassum N, Um E, Wissotski M, Yu Y, Zuccolo A, ur Rahman M, Peterson DG, Wing RA, Wendel JF, Paterson AH.

BMC Genomics. 2010 Jun 22;11:395. doi: 10.1186/1471-2164-11-395.

PMID:
20569427
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The B73 maize genome: complexity, diversity, and dynamics.

Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK.

Science. 2009 Nov 20;326(5956):1112-5. doi: 10.1126/science.1178534. Erratum in: Science. 2012 Aug 31;337(6098):1040.

PMID:
19965430
[PubMed - indexed for MEDLINE]
Free Article
16.

Analysis of transposons and repeat composition of the sunflower (Helianthus annuus L.) genome.

Cavallini A, Natali L, Zuccolo A, Giordani T, Jurman I, Ferrillo V, Vitacolonna N, Sarri V, Cattonaro F, Ceccarelli M, Cionini PG, Morgante M.

Theor Appl Genet. 2010 Feb;120(3):491-508. doi: 10.1007/s00122-009-1170-7. Epub 2009 Oct 14.

PMID:
19826774
[PubMed - indexed for MEDLINE]
17.

Probing a sialyltransferase's recognition domain to prepare alpha(2,8)-linked oligosialosides and analogs.

Zhang P, Zuccolo AJ, Li W, Zheng RB, Ling CC.

Chem Commun (Camb). 2009 Jul 28;(28):4233-5. doi: 10.1039/b908933k. Epub 2009 Jun 19.

PMID:
19585031
[PubMed - indexed for MEDLINE]
18.

Human gut microbiota in obesity and after gastric bypass.

Zhang H, DiBaise JK, Zuccolo A, Kudrna D, Braidotti M, Yu Y, Parameswaran P, Crowell MD, Wing R, Rittmann BE, Krajmalnik-Brown R.

Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2365-70. doi: 10.1073/pnas.0812600106. Epub 2009 Jan 21.

PMID:
19164560
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.

Ammiraju JS, Lu F, Sanyal A, Yu Y, Song X, Jiang N, Pontaroli AC, Rambo T, Currie J, Collura K, Talag J, Fan C, Goicoechea JL, Zuccolo A, Chen J, Bennetzen JL, Chen M, Jackson S, Wing RA.

Plant Cell. 2008 Dec;20(12):3191-209. doi: 10.1105/tpc.108.063727. Epub 2008 Dec 19.

PMID:
19098269
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Phylogenetic relationships between annual and perennial species of Helianthus: evolution of a tandem repeated DNA sequence and cytological hybridization experiments.

Natali L, Ceccarelli M, Giordani T, Sarri V, Zuccolo A, Jurman I, Morgante M, Cavallini A, Cionini PG.

Genome. 2008 Dec;51(12):1047-53. doi: 10.1139/G08-089.

PMID:
19088818
[PubMed - indexed for MEDLINE]

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