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Results: 10

1.

A bioengineered microenvironment to quantitatively measure the tumorigenic properties of cancer-associated fibroblasts in human prostate cancer.

Clark AK, Taubenberger AV, Taylor RA, Niranjan B, Chea ZY, Zotenko E, Sieh S, Pedersen JS, Norden S, Frydenberg M, Grummet JP, Pook DW; Australian Prostate Cancer BioResource, Stirzaker C, Clark SJ, Lawrence MG, Ellem SJ, Hutmacher DW, Risbridger GP.

Biomaterials. 2013 Jul;34(20):4777-85. doi: 10.1016/j.biomaterials.2013.03.005. Epub 2013 Apr 2.

PMID:
23562048
[PubMed - indexed for MEDLINE]
2.

Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers.

Hoinka J, Zotenko E, Friedman A, Sauna ZE, Przytycka TM.

Bioinformatics. 2012 Jun 15;28(12):i215-23. doi: 10.1093/bioinformatics/bts210.

PMID:
22689764
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

On the applicability of elastic network normal modes in small-molecule docking.

Dietzen M, Zotenko E, Hildebrandt A, Lengauer T.

J Chem Inf Model. 2012 Mar 26;52(3):844-56. doi: 10.1021/ci2004847. Epub 2012 Feb 23.

PMID:
22320151
[PubMed - indexed for MEDLINE]
4.

Inferring physical protein contacts from large-scale purification data of protein complexes.

Schelhorn SE, Mestre J, Albrecht M, Zotenko E.

Mol Cell Proteomics. 2011 Jun;10(6):M110.004929. doi: 10.1074/mcp.M110.004929. Epub 2011 Mar 30.

PMID:
21451165
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality.

Zotenko E, Mestre J, O'Leary DP, Przytycka TM.

PLoS Comput Biol. 2008 Aug 1;4(8):e1000140. doi: 10.1371/journal.pcbi.1000140.

PMID:
18670624
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Structural footprinting in protein structure comparison: the impact of structural fragments.

Zotenko E, Dogan RI, Wilbur WJ, O'Leary DP, Przytycka TM.

BMC Struct Biol. 2007 Aug 9;7:53.

PMID:
17688700
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Predicting domain-domain interactions using a parsimony approach.

GuimarĂ£es KS, Jothi R, Zotenko E, Przytycka TM.

Genome Biol. 2006;7(11):R104.

PMID:
17094802
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification.

Zotenko E, O'Leary DP, Przytycka TM.

BMC Struct Biol. 2006 Jun 8;6:12.

PMID:
16762072
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Decomposition of overlapping protein complexes: a graph theoretical method for analyzing static and dynamic protein associations.

Zotenko E, GuimarĂ£es KS, Jothi R, Przytycka TM.

Algorithms Mol Biol. 2006 Apr 26;1(1):7.

PMID:
16722537
[PubMed]
Free PMC Article
10.

COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations.

Jothi R, Zotenko E, Tasneem A, Przytycka TM.

Bioinformatics. 2006 Apr 1;22(7):779-88. Epub 2006 Jan 24.

PMID:
16434444
[PubMed - indexed for MEDLINE]
Free PMC Article

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