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Results: 11

1.

Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value.

Stirzaker C, Zotenko E, Song JZ, Qu W, Nair SS, Locke WJ, Stone A, Armstong NJ, Robinson MD, Dobrovic A, Avery-Kiejda KA, Peters KM, French JD, Stein S, Korbie DJ, Trau M, Forbes JF, Scott RJ, Brown MA, Francis GD, Clark SJ.

Nat Commun. 2015 Feb 2;6:5899. doi: 10.1038/ncomms6899.

PMID:
25641231
[PubMed - in process]
2.

A bioengineered microenvironment to quantitatively measure the tumorigenic properties of cancer-associated fibroblasts in human prostate cancer.

Clark AK, Taubenberger AV, Taylor RA, Niranjan B, Chea ZY, Zotenko E, Sieh S, Pedersen JS, Norden S, Frydenberg M, Grummet JP, Pook DW; Australian Prostate Cancer BioResource, Stirzaker C, Clark SJ, Lawrence MG, Ellem SJ, Hutmacher DW, Risbridger GP.

Biomaterials. 2013 Jul;34(20):4777-85. doi: 10.1016/j.biomaterials.2013.03.005. Epub 2013 Apr 2.

PMID:
23562048
[PubMed - indexed for MEDLINE]
3.

Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers.

Hoinka J, Zotenko E, Friedman A, Sauna ZE, Przytycka TM.

Bioinformatics. 2012 Jun 15;28(12):i215-23. doi: 10.1093/bioinformatics/bts210.

PMID:
22689764
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

On the applicability of elastic network normal modes in small-molecule docking.

Dietzen M, Zotenko E, Hildebrandt A, Lengauer T.

J Chem Inf Model. 2012 Mar 26;52(3):844-56. doi: 10.1021/ci2004847. Epub 2012 Feb 23.

PMID:
22320151
[PubMed - indexed for MEDLINE]
5.

Inferring physical protein contacts from large-scale purification data of protein complexes.

Schelhorn SE, Mestre J, Albrecht M, Zotenko E.

Mol Cell Proteomics. 2011 Jun;10(6):M110.004929. doi: 10.1074/mcp.M110.004929. Epub 2011 Mar 30.

PMID:
21451165
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality.

Zotenko E, Mestre J, O'Leary DP, Przytycka TM.

PLoS Comput Biol. 2008 Aug 1;4(8):e1000140. doi: 10.1371/journal.pcbi.1000140.

PMID:
18670624
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Structural footprinting in protein structure comparison: the impact of structural fragments.

Zotenko E, Dogan RI, Wilbur WJ, O'Leary DP, Przytycka TM.

BMC Struct Biol. 2007 Aug 9;7:53.

PMID:
17688700
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Predicting domain-domain interactions using a parsimony approach.

GuimarĂ£es KS, Jothi R, Zotenko E, Przytycka TM.

Genome Biol. 2006;7(11):R104.

PMID:
17094802
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification.

Zotenko E, O'Leary DP, Przytycka TM.

BMC Struct Biol. 2006 Jun 8;6:12.

PMID:
16762072
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Decomposition of overlapping protein complexes: a graph theoretical method for analyzing static and dynamic protein associations.

Zotenko E, GuimarĂ£es KS, Jothi R, Przytycka TM.

Algorithms Mol Biol. 2006 Apr 26;1(1):7.

PMID:
16722537
[PubMed]
Free PMC Article
11.

COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations.

Jothi R, Zotenko E, Tasneem A, Przytycka TM.

Bioinformatics. 2006 Apr 1;22(7):779-88. Epub 2006 Jan 24.

PMID:
16434444
[PubMed - indexed for MEDLINE]
Free PMC Article
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