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Items: 15


Three-dimensional disorganisation of the cancer genome occurs coincident with long range genetic and epigenetic alterations.

Taberlay PC, Achinger-Kawecka J, Lun AT, Buske FA, Sabir K, Gould CM, Zotenko E, Bert SA, Giles KA, Bauer DC, Smyth GK, Stirzaker C, O'Donoghue SI, Clark S.

Genome Res. 2016 Apr 6. pii: gr.201517.115. [Epub ahead of print]


DNA methylation of oestrogen-regulated enhancers defines endocrine sensitivity in breast cancer.

Stone A, Zotenko E, Locke WJ, Korbie D, Millar EK, Pidsley R, Stirzaker C, Graham P, Trau M, Musgrove EA, Nicholson RI, Gee JM, Clark SJ.

Nat Commun. 2015 Jul 14;6:7758. doi: 10.1038/ncomms8758.


MicroRNA profiling of the pubertal mouse mammary gland identifies miR-184 as a candidate breast tumour suppressor gene.

Phua YW, Nguyen A, Roden DL, Elsworth B, Deng N, Nikolic I, Yang J, Mcfarland A, Russell R, Kaplan W, Cowley MJ, Nair R, Zotenko E, O'Toole S, Tan SX, James DE, Clark SJ, Kouros-Mehr H, Swarbrick A.

Breast Cancer Res. 2015 Jun 13;17:83. doi: 10.1186/s13058-015-0593-0.


Coordinated epigenetic remodelling of transcriptional networks occurs during early breast carcinogenesis.

Locke WJ, Zotenko E, Stirzaker C, Robinson MD, Hinshelwood RA, Stone A, Reddel RR, Huschtscha LI, Clark SJ.

Clin Epigenetics. 2015 May 1;7(1):52. doi: 10.1186/s13148-015-0086-0. eCollection 2015.


Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value.

Stirzaker C, Zotenko E, Song JZ, Qu W, Nair SS, Locke WJ, Stone A, Armstong NJ, Robinson MD, Dobrovic A, Avery-Kiejda KA, Peters KM, French JD, Stein S, Korbie DJ, Trau M, Forbes JF, Scott RJ, Brown MA, Francis GD, Clark SJ.

Nat Commun. 2015 Feb 2;6:5899. doi: 10.1038/ncomms6899.


A bioengineered microenvironment to quantitatively measure the tumorigenic properties of cancer-associated fibroblasts in human prostate cancer.

Clark AK, Taubenberger AV, Taylor RA, Niranjan B, Chea ZY, Zotenko E, Sieh S, Pedersen JS, Norden S, Frydenberg M, Grummet JP, Pook DW; Australian Prostate Cancer BioResource, Stirzaker C, Clark SJ, Lawrence MG, Ellem SJ, Hutmacher DW, Risbridger GP.

Biomaterials. 2013 Jul;34(20):4777-85. doi: 10.1016/j.biomaterials.2013.03.005. Epub 2013 Apr 2.


Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers.

Hoinka J, Zotenko E, Friedman A, Sauna ZE, Przytycka TM.

Bioinformatics. 2012 Jun 15;28(12):i215-23. doi: 10.1093/bioinformatics/bts210.


On the applicability of elastic network normal modes in small-molecule docking.

Dietzen M, Zotenko E, Hildebrandt A, Lengauer T.

J Chem Inf Model. 2012 Mar 26;52(3):844-56. doi: 10.1021/ci2004847. Epub 2012 Feb 23. Erratum in: J Chem Inf Model. 2014 Dec 22;54(12):3453.


Inferring physical protein contacts from large-scale purification data of protein complexes.

Schelhorn SE, Mestre J, Albrecht M, Zotenko E.

Mol Cell Proteomics. 2011 Jun;10(6):M110.004929. doi: 10.1074/mcp.M110.004929. Epub 2011 Mar 30.


Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality.

Zotenko E, Mestre J, O'Leary DP, Przytycka TM.

PLoS Comput Biol. 2008 Aug 1;4(8):e1000140. doi: 10.1371/journal.pcbi.1000140.


Structural footprinting in protein structure comparison: the impact of structural fragments.

Zotenko E, Dogan RI, Wilbur WJ, O'Leary DP, Przytycka TM.

BMC Struct Biol. 2007 Aug 9;7:53.


Predicting domain-domain interactions using a parsimony approach.

GuimarĂ£es KS, Jothi R, Zotenko E, Przytycka TM.

Genome Biol. 2006;7(11):R104.


COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations.

Jothi R, Zotenko E, Tasneem A, Przytycka TM.

Bioinformatics. 2006 Apr 1;22(7):779-88. Epub 2006 Jan 24.

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