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Identification of genes expressed in the migrating primitive myeloid lineage of Xenopus laevis.

Agricola ZN, Jagpal AK, Allbee AW, Prewitt AR, Shifley ET, Rankin SA, Zorn AM, Kenny AP.

Dev Dyn. 2015 Aug 12. doi: 10.1002/dvdy.24314. [Epub ahead of print]


Xenbase: Core features, data acquisition, and data processing.

James-Zorn C, Ponferrada VG, Burns KA, Fortriede JD, Lotay VS, Liu Y, Brad Karpinka J, Karimi K, Zorn AM, Vize PD.

Genesis. 2015 Aug;53(8):486-97. doi: 10.1002/dvg.22873. Epub 2015 Jul 16.


A New Nomenclature of Xenopus laevis Chromosomes Based on the Phylogenetic Relationship to Silurana/Xenopus tropicalis.

Matsuda Y, Uno Y, Kondo M, Gilchrist MJ, Zorn AM, Rokhsar DS, Schmid M, Taira M.

Cytogenet Genome Res. 2015 Apr 8. [Epub ahead of print]


Finding our way through phenotypes.

Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, Das S, Dececchi TA, Dettai A, Diogo R, Druzinsky RE, Dumontier M, Franz NM, Friedrich F, Gkoutos GV, Haendel M, Harmon LJ, Hayamizu TF, He Y, Hines HM, Ibrahim N, Jackson LM, Jaiswal P, James-Zorn C, Köhler S, Lecointre G, Lapp H, Lawrence CJ, Le Novère N, Lundberg JG, Macklin J, Mast AR, Midford PE, Mikó I, Mungall CJ, Oellrich A, Osumi-Sutherland D, Parkinson H, Ramírez MJ, Richter S, Robinson PN, Ruttenberg A, Schulz KS, Segerdell E, Seltmann KC, Sharkey MJ, Smith AD, Smith B, Specht CD, Squires RB, Thacker RW, Thessen A, Fernandez-Triana J, Vihinen M, Vize PD, Vogt L, Wall CE, Walls RL, Westerfeld M, Wharton RA, Wirkner CS, Woolley JB, Yoder MJ, Zorn AM, Mabee P.

PLoS Biol. 2015 Jan 6;13(1):e1002033. doi: 10.1371/journal.pbio.1002033. eCollection 2015 Jan.


Structure of neuroblastoma suppressor of tumorigenicity 1 (NBL1): insights for the functional variability across bone morphogenetic protein (BMP) antagonists.

Nolan K, Kattamuri C, Luedeke DM, Angerman EB, Rankin SA, Stevens ML, Zorn AM, Thompson TB.

J Biol Chem. 2015 Feb 20;290(8):4759-71. doi: 10.1074/jbc.M114.628412. Epub 2015 Jan 5.


Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes.

Karpinka JB, Fortriede JD, Burns KA, James-Zorn C, Ponferrada VG, Lee J, Karimi K, Zorn AM, Vize PD.

Nucleic Acids Res. 2015 Jan;43(Database issue):D756-63. doi: 10.1093/nar/gku956. Epub 2014 Oct 13.


A Molecular atlas of Xenopus respiratory system development.

Rankin SA, Thi Tran H, Wlizla M, Mancini P, Shifley ET, Bloor SD, Han L, Vleminckx K, Wert SE, Zorn AM.

Dev Dyn. 2015 Jan;244(1):69-85. doi: 10.1002/dvdy.24180. Epub 2014 Sep 11.


Gene regulatory networks governing lung specification.

Rankin SA, Zorn AM.

J Cell Biochem. 2014 Aug;115(8):1343-50. doi: 10.1002/jcb.24810. Review.


Par6b regulates the dynamics of apicobasal polarity during development of the stratified Xenopus epidermis.

Wang S, Cha SW, Zorn AM, Wylie C.

PLoS One. 2013 Oct 18;8(10):e76854. doi: 10.1371/journal.pone.0076854. eCollection 2013.


Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.

Segerdell E, Ponferrada VG, James-Zorn C, Burns KA, Fortriede JD, Dahdul WM, Vize PD, Zorn AM.

J Biomed Semantics. 2013 Oct 18;4(1):31. doi: 10.1186/2041-1480-4-31.


Structure of protein related to Dan and Cerberus: insights into the mechanism of bone morphogenetic protein antagonism.

Nolan K, Kattamuri C, Luedeke DM, Deng X, Jagpal A, Zhang F, Linhardt RJ, Kenny AP, Zorn AM, Thompson TB.

Structure. 2013 Aug 6;21(8):1417-29. doi: 10.1016/j.str.2013.06.005. Epub 2013 Jul 11.


Different thresholds of Wnt-Frizzled 7 signaling coordinate proliferation, morphogenesis and fate of endoderm progenitor cells.

Zhang Z, Rankin SA, Zorn AM.

Dev Biol. 2013 Jun 1;378(1):1-12. doi: 10.1016/j.ydbio.2013.02.024. Epub 2013 Apr 3.


The Xenbase literature curation process.

Bowes JB, Snyder KA, James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Bhattacharyya B, Zorn AM, Vize PD.

Database (Oxford). 2013 Jan 9;2013:bas046. doi: 10.1093/database/bas046. Print 2013.


Xenbase: expansion and updates of the Xenopus model organism database.

James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Segerdell EJ, Lee J, Snyder K, Bhattacharyya B, Karpinka JB, Fortriede J, Bowes JB, Zorn AM, Vize PD.

Nucleic Acids Res. 2013 Jan;41(Database issue):D865-70. doi: 10.1093/nar/gks1025. Epub 2012 Nov 3.


Members of the DAN family are BMP antagonists that form highly stable noncovalent dimers.

Kattamuri C, Luedeke DM, Nolan K, Rankin SA, Greis KD, Zorn AM, Thompson TB.

J Mol Biol. 2012 Dec 14;424(5):313-27. doi: 10.1016/j.jmb.2012.10.003. Epub 2012 Oct 9.


Prolonged FGF signaling is necessary for lung and liver induction in Xenopus.

Shifley ET, Kenny AP, Rankin SA, Zorn AM.

BMC Dev Biol. 2012 Sep 18;12:27. doi: 10.1186/1471-213X-12-27.


Sizzled-tolloid interactions maintain foregut progenitors by regulating fibronectin-dependent BMP signaling.

Kenny AP, Rankin SA, Allbee AW, Prewitt AR, Zhang Z, Tabangin ME, Shifley ET, Louza MP, Zorn AM.

Dev Cell. 2012 Aug 14;23(2):292-304. doi: 10.1016/j.devcel.2012.07.002. Epub 2012 Aug 2.


Suppression of Bmp4 signaling by the zinc-finger repressors Osr1 and Osr2 is required for Wnt/β-catenin-mediated lung specification in Xenopus.

Rankin SA, Gallas AL, Neto A, Gómez-Skarmeta JL, Zorn AM.

Development. 2012 Aug;139(16):3010-20. doi: 10.1242/dev.078220. Epub 2012 Jul 12.


CRIM1 complexes with ß-catenin and cadherins, stabilizes cell-cell junctions and is critical for neural morphogenesis.

Ponferrada VG, Fan J, Vallance JE, Hu S, Mamedova A, Rankin SA, Kofron M, Zorn AM, Hegde RS, Lang RA.

PLoS One. 2012;7(3):e32635. doi: 10.1371/journal.pone.0032635. Epub 2012 Mar 12.


New doxycycline-inducible transgenic lines in Xenopus.

Rankin SA, Zorn AM, Buchholz DR.

Dev Dyn. 2011 Jun;240(6):1467-74. doi: 10.1002/dvdy.22642. Epub 2011 Apr 12.

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