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Items: 1 to 20 of 31


A categorical analysis of coreference resolution errors in biomedical texts.

Choi M, Zobel J, Verspoor K.

J Biomed Inform. 2016 Apr;60:309-18. doi: 10.1016/j.jbi.2016.02.015. Epub 2016 Feb 27.


Quenching of Charge Transfer in Nitrobenzene Induced by Vibrational Motion.

Zobel JP, Nogueira JJ, González L.

J Phys Chem Lett. 2015 Aug 6;6(15):3006-11. doi: 10.1021/acs.jpclett.5b00990. Epub 2015 Jul 20.


Effect of body position on ventilation distribution during PEEP titration in a porcine model of acute lung injury using advanced respiratory monitoring and electrical impedance tomography.

Pfurtscheller K, Ring S, Beran E, Sorantin E, Zobel J, Ganster D, Avian A, Zobel G.

Intensive Care Med Exp. 2015 Dec;3(1):38. doi: 10.1186/s40635-014-0038-6. Epub 2015 Jan 31.


Bandage: interactive visualization of de novo genome assemblies.

Wick RR, Schultz MB, Zobel J, Holt KE.

Bioinformatics. 2015 Oct 15;31(20):3350-2. doi: 10.1093/bioinformatics/btv383. Epub 2015 Jun 22.


High performance computing enabling exhaustive analysis of higher order single nucleotide polymorphism interaction in Genome Wide Association Studies.

Goudey B, Abedini M, Hopper JL, Inouye M, Makalic E, Schmidt DF, Wagner J, Zhou Z, Zobel J, Reumann M.

Health Inf Sci Syst. 2015 Feb 24;3(Suppl 1 HISA Big Data in Biomedicine and Healthcare 2013 Con):S3. doi: 10.1186/2047-2501-3-S1-S3. eCollection 2015.


SRST2: Rapid genomic surveillance for public health and hospital microbiology labs.

Inouye M, Dashnow H, Raven LA, Schultz MB, Pope BJ, Tomita T, Zobel J, Holt KE.

Genome Med. 2014 Nov 20;6(11):90. doi: 10.1186/s13073-014-0090-6. eCollection 2014.


Communication: electron transfer mediated decay enabled by spin-orbit interaction in small krypton/xenon clusters.

Zobel JP, Kryzhevoi NV, Pernpointner M.

J Chem Phys. 2014 Apr 28;140(16):161103. doi: 10.1063/1.4873134.


Accurate and robust genomic prediction of celiac disease using statistical learning.

Abraham G, Tye-Din JA, Bhalala OG, Kowalczyk A, Zobel J, Inouye M.

PLoS Genet. 2014 Feb 13;10(2):e1004137. doi: 10.1371/journal.pgen.1004137. eCollection 2014 Feb. Erratum in: PLoS Genet. 2014 Apr;10(4):e1004374.


Supercomputing enabling exhaustive statistical analysis of genome wide association study data: Preliminary results.

Reumann M, Makalic E, Goudey BW, Inouye M, Bickerstaffe A, Bui M, Park DJ, Kapuscinski MK, Schmidt DF, Zhou Z, Qian G, Zobel J, Wagner J, Hopper JL.

Conf Proc IEEE Eng Med Biol Soc. 2012;2012:1258-61. doi: 10.1109/EMBC.2012.6346166.


Performance and robustness of penalized and unpenalized methods for genetic prediction of complex human disease.

Abraham G, Kowalczyk A, Zobel J, Inouye M.

Genet Epidemiol. 2013 Feb;37(2):184-95. doi: 10.1002/gepi.21698. Epub 2012 Nov 30.


Short read sequence typing (SRST): multi-locus sequence types from short reads.

Inouye M, Conway TC, Zobel J, Holt KE.

BMC Genomics. 2012 Jul 24;13:338.


Gossamer--a resource-efficient de novo assembler.

Conway T, Wazny J, Bromage A, Zobel J, Beresford-Smith B.

Bioinformatics. 2012 Jul 15;28(14):1937-8. doi: 10.1093/bioinformatics/bts297. Epub 2012 May 18.


SparSNP: fast and memory-efficient analysis of all SNPs for phenotype prediction.

Abraham G, Kowalczyk A, Zobel J, Inouye M.

BMC Bioinformatics. 2012 May 10;13:88. doi: 10.1186/1471-2105-13-88.


Iterative dictionary construction for compression of large DNA data sets.

Kuruppu S, Beresford-Smith B, Conway T, Zobel J.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Jan-Feb;9(1):137-49. doi: 10.1109/TCBB.2011.82. Epub 2011 Apr 27.


Dual functional monoclonal antibody PF-04605412 targets integrin alpha5beta1 and elicits potent antibody-dependent cellular cytotoxicity.

Li G, Zhang L, Chen E, Wang J, Jiang X, Chen JH, Wickman G, Amundson K, Bergqvist S, Zobel J, Buckman D, Baxi SM, Bender SL, Casperson GF, Hu-Lowe DD.

Cancer Res. 2010 Dec 15;70(24):10243-54. doi: 10.1158/0008-5472.CAN-10-1996. Erratum in: Cancer Res. 2011 Feb 15;71(4):1507.


Boolean versus ranked querying for biomedical systematic reviews.

Karimi S, Pohl S, Scholer F, Cavedon L, Zobel J.

BMC Med Inform Decis Mak. 2010 Oct 12;10:58. doi: 10.1186/1472-6947-10-58.


Reference-free validation of short read data.

Schröder J, Bailey J, Conway T, Zobel J.

PLoS One. 2010 Sep 22;5(9):e12681. doi: 10.1371/journal.pone.0012681.


Prediction of breast cancer prognosis using gene set statistics provides signature stability and biological context.

Abraham G, Kowalczyk A, Loi S, Haviv I, Zobel J.

BMC Bioinformatics. 2010 May 25;11:277. doi: 10.1186/1471-2105-11-277.


PF-03475952: a potent and neutralizing fully human anti-CD44 antibody for therapeutic applications in inflammatory diseases.

Runnels HA, Weber GL, Min J, Kudlacz EM, Zobel JF, Donovan CB, Thiede MA, Zhang J, Alpert RB, Salafia MA, Milici AJ, Burdette D, Bell RR, Beebe JS, Xu X.

Adv Ther. 2010 Mar;27(3):168-80. doi: 10.1007/s12325-010-0010-0. Epub 2010 Apr 26.


Mutations within a human IgG2 antibody form distinct and homogeneous disulfide isomers but do not affect Fc gamma receptor or C1q binding.

Lightle S, Aykent S, Lacher N, Mitaksov V, Wells K, Zobel J, Oliphant T.

Protein Sci. 2010 Apr;19(4):753-62. doi: 10.1002/pro.352.

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