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Results: 1 to 20 of 294

1.

p53-regulated networks of protein, mRNA, miRNA and lncRNA expression revealed by integrated pSILAC and NGS analyses.

Hünten S, Kaller M, Drepper F, Oeljeklaus S, Bonfert T, Erhard F, Dueck A, Eichner N, Friedel CC, Meister G, Zimmer R, Warscheid B, Hermeking H.

Mol Cell Proteomics. 2015 Jul 16. pii: mcp.M115.050237. [Epub ahead of print]

2.

Count ratio model reveals bias affecting NGS fold changes.

Erhard F, Zimmer R.

Nucleic Acids Res. 2015 Jul 8. pii: gkv696. [Epub ahead of print]

3.

Widespread disruption of host transcription termination in HSV-1 infection.

Rutkowski AJ, Erhard F, L'Hernault A, Bonfert T, Schilhabel M, Crump C, Rosenstiel P, Efstathiou S, Zimmer R, Friedel CC, Dölken L.

Nat Commun. 2015 May 20;6:7126. doi: 10.1038/ncomms8126.

4.

ContextMap 2: fast and accurate context-based RNA-seq mapping.

Bonfert T, Kirner E, Csaba G, Zimmer R, Friedel CC.

BMC Bioinformatics. 2015 Apr 17;16:122. doi: 10.1186/s12859-015-0557-5.

5.

Addressing false discoveries in network inference.

Petri T, Altmann S, Geistlinger L, Zimmer R, Küffner R.

Bioinformatics. 2015 Apr 24. pii: btv215. [Epub ahead of print]

PMID:
25910697
6.

Thrilling strain! Donor-acceptor-substituted cyclobutanes for the synthesis of (hetero)cyclic compounds.

Reissig HU, Zimmer R.

Angew Chem Int Ed Engl. 2015 Apr 20;54(17):5009-11. doi: 10.1002/anie.201501135. Epub 2015 Mar 24.

PMID:
25809425
7.

Münchnones--new facets after 50 years.

Reissig HU, Zimmer R.

Angew Chem Int Ed Engl. 2014 Sep 8;53(37):9708-10. doi: 10.1002/anie.201405092. Epub 2014 Jul 18. No abstract available.

PMID:
25045012
8.

Long-term outcomes of orthotopic heart transplantation for hypertrophic cardiomyopathy.

Lee MS, Zimmer R, Kobashigawa J.

Transplant Proc. 2014 Jun;46(5):1502-5. doi: 10.1016/j.transproceed.2013.12.052.

PMID:
24935320
9.

A loss of function analysis of host factors influencing Vaccinia virus replication by RNA interference.

Beard PM, Griffiths SJ, Gonzalez O, Haga IR, Pechenick Jowers T, Reynolds DK, Wildenhain J, Tekotte H, Auer M, Tyers M, Ghazal P, Zimmer R, Haas J.

PLoS One. 2014 Jun 5;9(6):e98431. doi: 10.1371/journal.pone.0098431. eCollection 2014.

10.

Widespread context dependency of microRNA-mediated regulation.

Erhard F, Haas J, Lieber D, Malterer G, Jaskiewicz L, Zavolan M, Dölken L, Zimmer R.

Genome Res. 2014 Jun;24(6):906-19. doi: 10.1101/gr.166702.113. Epub 2014 Mar 25.

11.

PEPSE and coke: should we be increasing awareness of HIV post-exposure prophylaxis for consensual risk exposures?

Zimmer R.

HIV Med. 2014 Apr;15(4):255-6. doi: 10.1111/hiv.12114. No abstract available.

PMID:
24581325
12.

Alkoxyallenes as building blocks for organic synthesis.

Zimmer R, Reissig HU.

Chem Soc Rev. 2014 May 7;43(9):2888-903. doi: 10.1039/c3cs60429b. Epub 2014 Feb 19. Review.

PMID:
24549322
13.

Effects of 1-year treatment with highly purified omega-3 fatty acids on depression after myocardial infarction: results from the OMEGA trial.

Zimmer R, Riemer T, Rauch B, Schneider S, Schiele R, Gohlke H, Diller F, Steinbeck G, Katus H, Senges J; OMEGA-Study Group.

J Clin Psychiatry. 2013 Nov;74(11):e1037-45. doi: 10.4088/JCP.13m08453.

PMID:
24330904
14.

Inactivation of intergenic enhancers by EBNA3A initiates and maintains polycomb signatures across a chromatin domain encoding CXCL10 and CXCL9.

Harth-Hertle ML, Scholz BA, Erhard F, Glaser LV, Dölken L, Zimmer R, Kempkes B.

PLoS Pathog. 2013 Sep;9(9):e1003638. doi: 10.1371/journal.ppat.1003638. Epub 2013 Sep 19.

15.

Mining RNA-seq data for infections and contaminations.

Bonfert T, Csaba G, Zimmer R, Friedel CC.

PLoS One. 2013 Sep 3;8(9):e73071. doi: 10.1371/journal.pone.0073071. eCollection 2013.

16.

The physics of broadcast spawning in benthic invertebrates.

Crimaldi JP, Zimmer RK.

Ann Rev Mar Sci. 2014;6:141-65. doi: 10.1146/annurev-marine-010213-135119. Epub 2013 Aug 14. Review.

PMID:
23957600
17.

A Turing test for artificial expression data.

Maier R, Zimmer R, Küffner R.

Bioinformatics. 2013 Oct 15;29(20):2603-9. doi: 10.1093/bioinformatics/btt438. Epub 2013 Aug 16.

18.

A systematic analysis of host factors reveals a Med23-interferon-λ regulatory axis against herpes simplex virus type 1 replication.

Griffiths SJ, Koegl M, Boutell C, Zenner HL, Crump CM, Pica F, Gonzalez O, Friedel CC, Barry G, Martin K, Craigon MH, Chen R, Kaza LN, Fossum E, Fazakerley JK, Efstathiou S, Volpi A, Zimmer R, Ghazal P, Haas J.

PLoS Pathog. 2013;9(8):e1003514. doi: 10.1371/journal.ppat.1003514. Epub 2013 Aug 8.

19.

PARma: identification of microRNA target sites in AGO-PAR-CLIP data.

Erhard F, Dölken L, Jaskiewicz L, Zimmer R.

Genome Biol. 2013 Jul 29;14(7):R79. doi: 10.1186/gb-2013-14-7-r79.

20.

A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae.

Geistlinger L, Csaba G, Dirmeier S, Küffner R, Zimmer R.

Nucleic Acids Res. 2013 Oct;41(18):8452-63. doi: 10.1093/nar/gkt631. Epub 2013 Jul 19.

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