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Results: 1 to 20 of 46


Bioinformatics tools for achieving better gene silencing in plants.

Ahmed F, Dai X, Zhao PX.

Methods Mol Biol. 2015;1287:43-60. doi: 10.1007/978-1-4939-2453-0_3.


Comprehensive analysis of small RNA-seq data reveals that combination of miRNA with its isomiRs increase the accuracy of target prediction in Arabidopsis thaliana.

Ahmed F, Senthil-Kumar M, Lee S, Dai X, Mysore KS, Zhao PX.

RNA Biol. 2014;11(11):1414-29. doi: 10.1080/15476286.2014.996474.


Arabidopsis ERF109 mediates cross-talk between jasmonic acid and auxin biosynthesis during lateral root formation.

Cai XT, Xu P, Zhao PX, Liu R, Yu LH, Xiang CB.

Nat Commun. 2014 Dec 19;5:5833. doi: 10.1038/ncomms6833.


Quality evaluation of extracted ion chromatograms and chromatographic peaks in liquid chromatography/mass spectrometry-based metabolomics data.

Zhang W, Zhao PX.

BMC Bioinformatics. 2014;15 Suppl 11:S5. doi: 10.1186/1471-2105-15-S11-S5. Epub 2014 Oct 21.


An RNA-Seq based gene expression atlas of the common bean.

O'Rourke JA, Iniguez LP, Fu F, Bucciarelli B, Miller SS, Jackson SA, McClean PE, Li J, Dai X, Zhao PX, Hernandez G, Vance CP.

BMC Genomics. 2014 Oct 6;15:866. doi: 10.1186/1471-2164-15-866.


Prediction of membrane transport proteins and their substrate specificities using primary sequence information.

Mishra NK, Chang J, Zhao PX.

PLoS One. 2014 Jun 26;9(6):e100278. doi: 10.1371/journal.pone.0100278. eCollection 2014.


MET-COFEA: a liquid chromatography/mass spectrometry data processing platform for metabolite compound feature extraction and annotation.

Zhang W, Chang J, Lei Z, Huhman D, Sumner LW, Zhao PX.

Anal Chem. 2014 Jul 1;86(13):6245-53. doi: 10.1021/ac501162k. Epub 2014 Jun 9.


Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons.

Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ.

PLoS One. 2014 Jan 27;9(1):e86153. doi: 10.1371/journal.pone.0086153. eCollection 2014.


Global transcriptome sequencing using the Illumina platform and the development of EST-SSR markers in autotetraploid alfalfa.

Liu Z, Chen T, Ma L, Zhao Z, Zhao PX, Nan Z, Wang Y.

PLoS One. 2013 Dec 12;8(12):e83549. doi: 10.1371/journal.pone.0083549. eCollection 2013.


DeGNServer: deciphering genome-scale gene networks through high performance reverse engineering analysis.

Li J, Wei H, Zhao PX.

Biomed Res Int. 2013;2013:856325. doi: 10.1155/2013/856325. Epub 2013 Nov 17.


PlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool.

Dai X, Sinharoy S, Udvardi M, Zhao PX.

BMC Bioinformatics. 2013 Nov 12;14:321. doi: 10.1186/1471-2105-14-321.


GPLEXUS: enabling genome-scale gene association network reconstruction and analysis for very large-scale expression data.

Li J, Wei H, Liu T, Zhao PX.

Nucleic Acids Res. 2014 Mar;42(5):e32. doi: 10.1093/nar/gkt983. Epub 2013 Oct 30.


[Spatiotemporal variation of vegetation in northern Shaanxi of Northwest China based on SPOT-VGT NDVI].

Yang YZ, Zhao PX, Hao HK, Chang M.

Ying Yong Sheng Tai Xue Bao. 2012 Jul;23(7):1897-903. Chinese.


[Habitat assessment of giant panda in Qingmuchuan Nature Reserve, Shaanxi Province of Northwest China].

Wang Y, Zhao PX.

Ying Yong Sheng Tai Xue Bao. 2012 Jan;23(1):206-12. Chinese.


LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes.

Li J, Dai X, Liu T, Zhao PX.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1221-9. doi: 10.1093/nar/gkr939. Epub 2011 Nov 21.


Zirconium arsenate-modified silica nanoparticles for specific capture of phosphopeptides and direct analysis by matrix-assisted laser desorption/ionization mass spectrometry.

Zhao PX, Guo XF, Wang H, Qi CB, Xia HS, Zhang HS.

Anal Bioanal Chem. 2012 Jan;402(3):1041-56. doi: 10.1007/s00216-011-5547-5. Epub 2011 Nov 22.


Simple and rapid determination of thiol compounds by HPLC and fluorescence detection with 1,3,5,7-tetramethyl-8-phenyl-(2-maleimide) difluoroboradiaza-s-indacene.

Guo XF, Zhao PX, Wang H, Zhang HS.

J Chromatogr B Analyt Technol Biomed Life Sci. 2011 Dec 15;879(32):3932-6. doi: 10.1016/j.jchromb.2011.10.042. Epub 2011 Nov 7.


The Medicago genome provides insight into the evolution of rhizobial symbioses.

Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P, Bechner M, Bellec A, Berger A, Bergès H, Bidwell S, Bisseling T, Choisne N, Couloux A, Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C, Gibelin C, Gish J, Goldstein S, González AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray SJ, Jeong DH, Jing Y, Jöcker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C, Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C, Sallet E, Samain S, Samson N, Sanders I, Saurat O, Scarpelli C, Schiex T, Segurens B, Severin AJ, Sherrier DJ, Shi R, Sims S, Singer SR, Sinharoy S, Sterck L, Viollet A, Wang BB, Wang K, Wang M, Wang X, Warfsmann J, Weissenbach J, White DD, White JD, Wiley GB, Wincker P, Xing Y, Yang L, Yao Z, Ying F, Zhai J, Zhou L, Zuber A, Dénarié J, Dixon RA, May GD, Schwartz DC, Rogers J, Quétier F, Town CD, Roe BA.

Nature. 2011 Nov 16;480(7378):520-4. doi: 10.1038/nature10625.


Determination of azatadine in human plasma by liquid chromatography/tandem mass spectrometry.

Zhu YR, Jia YY, Jiang L, Wang C, Ding LK, Yang J, Li L, Zhao PX, Liu WX, Yi-Ding, Wang L, Wen AD.

J Chromatogr B Analyt Technol Biomed Life Sci. 2011 Aug 1;879(23):2189-93. doi: 10.1016/j.jchromb.2011.05.050. Epub 2011 Jun 12.


Genome-wide SNP discovery in tetraploid alfalfa using 454 sequencing and high resolution melting analysis.

Han Y, Kang Y, Torres-Jerez I, Cheung F, Town CD, Zhao PX, Udvardi MK, Monteros MJ.

BMC Genomics. 2011 Jul 6;12:1-11. doi: 10.1186/1471-2164-12-350.

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